miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>38510_crm-mir-47:mirbase
Length = 105
Score = 60.0 bits (30), Expect = 3e-10
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 58 tactgtcatggaggcgctctcttcagatgatgtctggc 95
|||||||||||||||||||||||||| |||| ||||||
Sbjct: 59 tactgtcatggaggcgctctcttcaggtgatctctggc 96
>38509_crm-mir-46:mirbase
Length = 108
Score = 58.0 bits (29), Expect = 1e-09
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 16 ctgaagagagcagtctattgacagtcggttactcgaaatctttactgtcatggaggcgct 75
||||||||||| ||||||||||||| ||| || | | | ||||||||||||| ||||
Sbjct: 23 ctgaagagagccgtctattgacagttcgtttctatacttatgtactgtcatggagtcgct 82
Query: 76 ctcttcagatgat 88
|||||||||||||
Sbjct: 83 ctcttcagatgat 95
>38158_cbr-mir-47:mirbase
Length = 93
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 57 ttactgtcatggaggcgctctcttcag 83
|||||||||||||||||||||||||||
Sbjct: 53 ttactgtcatggaggcgctctcttcag 79
>38157_cbr-mir-46:mirbase
Length = 94
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 60 ctgtcatggaggcgctctcttcagatgat 88
||||||||||| |||||||||||||||||
Sbjct: 57 ctgtcatggagtcgctctcttcagatgat 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 11 tgaaactgaagagagcagtctattgacagt 40
|||| ||||||||||| |||||||||||||
Sbjct: 11 tgaagctgaagagagccgtctattgacagt 40
>38283_cel-mir-46:mirbase
Length = 97
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 60 ctgtcatggaggcgctctcttcagatgat 88
||||||||||| |||||||||||||||||
Sbjct: 60 ctgtcatggagtcgctctcttcagatgat 88
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 11 tgaaactgaagagagcagtctattgacagt 40
|||| ||||||||||| |||||||||||||
Sbjct: 7 tgaagctgaagagagccgtctattgacagt 36
