miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00249;mir-46;Z69663.1/519-592 6239:Caenorhabditis elegans
Length = 74
Score = 147 bits (74), Expect = 3e-35
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 14 aactgaagagagcagtctattgacagtcggttactcgaaatctttactgtcatggaggcg 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aactgaagagagcagtctattgacagtcggttactcgaaatctttactgtcatggaggcg 60
Query: 74 ctctcttcagatga 87
||||||||||||||
Sbjct: 61 ctctcttcagatga 74
>RF00249;mir-46;ABLE02002405.1/9341-9413 281687:Caenorhabditis
japonica
Length = 73
Score = 73.8 bits (37), Expect = 4e-13
Identities = 66/74 (89%), Gaps = 5/74 (6%)
Strand = Plus / Plus
Query: 16 ctgaagagagcagtctattgacagtcggtt--actcgaaatctttactgtcatggaggcg 73
||||||||||||||||||||||||| |||| |||| || || |||||||||||||||
Sbjct: 3 ctgaagagagcagtctattgacagttggttctactccaactc---actgtcatggaggcg 59
Query: 74 ctctcttcagatga 87
||||||||||||||
Sbjct: 60 ctctcttcagatga 73
>RF00249;mir-46;ABEG01019121.1/8208-8137 135651:Caenorhabditis
brenneri
Length = 72
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 57 ttactgtcatggaggcgctctcttcagatga 87
|||||||||||||||||||||||||||||||
Sbjct: 42 ttactgtcatggaggcgctctcttcagatga 72
>RF00249;mir-46;AAGD02008041.1/22073-22144 31234:Caenorhabditis
remanei
Length = 72
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 58 tactgtcatggaggcgctctcttcag 83
||||||||||||||||||||||||||
Sbjct: 43 tactgtcatggaggcgctctcttcag 68
>RF00249;mir-46;ABEG01013767.1/31821-31746 135651:Caenorhabditis
brenneri
Length = 76
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 58 tactgtcatggaggcgctctcttcagatga 87
||||||||||||| ||||||||||||||||
Sbjct: 47 tactgtcatggagtcgctctcttcagatga 76
>RF00249;mir-46;ABLE02008754.1/1796-1721 281687:Caenorhabditis
japonica
Length = 76
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 60 ctgtcatggaggcgctctcttcagatga 87
||||||||||| ||||||||||||||||
Sbjct: 49 ctgtcatggagtcgctctcttcagatga 76
>RF00249;mir-46;Z82094.1/4737-4814 6239:Caenorhabditis elegans
Length = 78
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 60 ctgtcatggaggcgctctcttcagatga 87
||||||||||| ||||||||||||||||
Sbjct: 51 ctgtcatggagtcgctctcttcagatga 78
