miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00798;mir-49;Z48006.1/9366-9462 6239:Caenorhabditis elegans
Length = 97
Score = 192 bits (97), Expect = 6e-49
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 1 ttttgaaaaagaccaccgtccgcagtttgttgtgatgtgctccaagcaatcatgagtctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttttgaaaaagaccaccgtccgcagtttgttgtgatgtgctccaagcaatcatgagtctg 60
Query: 61 aagcaccacgagaagctgcagatggaggttctgattt 97
|||||||||||||||||||||||||||||||||||||
Sbjct: 61 aagcaccacgagaagctgcagatggaggttctgattt 97
>RF00798;mir-49;AAGD02000772.1/52927-52830 31234:Caenorhabditis
remanei
Length = 98
Score = 75.8 bits (38), Expect = 9e-14
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 19 tccgcagtttgttgtgatgtgctccaagcaatcatgagtctgaagcaccacgagaagctg 78
|||||||||| || ||||||||||| ||| | |||| || |||||||||||||||||||
Sbjct: 20 tccgcagtttcttatgatgtgctccgagccaacatgtgttcgaagcaccacgagaagctg 79
Query: 79 cagatggagg 88
||||||||||
Sbjct: 80 cagatggagg 89
>RF00798;mir-49;ABEG01020741.1/1121-1218 135651:Caenorhabditis
brenneri
Length = 98
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 60 gaagcaccacgagaagctgcagatggag 87
||||||||||||||||||||||||||||
Sbjct: 61 gaagcaccacgagaagctgcagatggag 88
>RF00798;mir-49;CAAC02000448.1/477630-477533 6238:Caenorhabditis
briggsae
Length = 98
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 60 gaagcaccacgagaagctgcagatgga 86
|||||||||||||||||||||||||||
Sbjct: 61 gaagcaccacgagaagctgcagatgga 87
>RF00798;mir-49;ABLE02000213.1/4582-4487 281687:Caenorhabditis
japonica
Length = 96
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 60 gaagcaccacgagaagctgcagatgg 85
||||||||||||||||||||||||||
Sbjct: 59 gaagcaccacgagaagctgcagatgg 84
