miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00815;mir-244;AF067617.1/15169-15068 6239:Caenorhabditis elegans
Length = 102
Score = 196 bits (99), Expect = 4e-50
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 1 ctccatatctcaatctctttggttgtacaaagtggtatggctcatcgaataagcacatac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ctccatatctcaatctctttggttgtacaaagtggtatggctcatcgaataagcacatac 61
Query: 61 tgcttttcagctaaaggaattgagattttgtaggctttt 99
|||||||||||||||||||||||||||||||||||||||
Sbjct: 62 tgcttttcagctaaaggaattgagattttgtaggctttt 100
>RF00815;mir-244;ABEG01020864.1/3553-3656 135651:Caenorhabditis
brenneri
Length = 104
Score = 61.9 bits (31), Expect = 1e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 3 ccatatctcaatctctttggttgtacaaagtggtatggc 41
|||| |||| |||||||||||||||||||||||||||||
Sbjct: 4 ccatttctcgatctctttggttgtacaaagtggtatggc 42
>RF00815;mir-244;AAGD02001046.1/36887-36781 31234:Caenorhabditis
remanei
Length = 107
Score = 60.0 bits (30), Expect = 6e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 8 tctcaatctctttggttgtacaaagtggtatggc 41
|||| |||||||||||||||||||||||||||||
Sbjct: 10 tctcgatctctttggttgtacaaagtggtatggc 43
>RF00815;mir-244;CAAC02000589.1/1456779-1456876
6238:Caenorhabditis briggsae
Length = 98
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 16 tctttggttgtacaaagtggtatggctc 43
||||||||||||||||||||||||||||
Sbjct: 18 tctttggttgtacaaagtggtatggctc 45
>RF00815;mir-244;ABLE02005099.1/2723-2825 281687:Caenorhabditis
japonica
Length = 103
Score = 56.0 bits (28), Expect = 9e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 8 tctcaatctctttggttgtacaaagtggtatg 39
|||| |||||||||||||||||||||||||||
Sbjct: 8 tctcgatctctttggttgtacaaagtggtatg 39
