miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00838;mir-252;Z66521.1/2054-1944 6239:Caenorhabditis elegans
Length = 111
Score = 194 bits (98), Expect = 1e-49
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 1 tccaggggtctctttcagttataagtagtagtgccgcaggtaaccgccagtctaaaaggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 tccaggggtctctttcagttataagtagtagtgccgcaggtaaccgccagtctaaaaggc 65
Query: 61 ttacctactgccttctgcttaaaattgaaatattgatg 98
||||||||||||||||||||||||||||||||||||||
Sbjct: 66 ttacctactgccttctgcttaaaattgaaatattgatg 103
>RF00838;mir-252;AAGD02000357.1/21908-22018 31234:Caenorhabditis
remanei
Length = 111
Score = 95.6 bits (48), Expect = 1e-19
Identities = 81/92 (88%)
Strand = Plus / Plus
Query: 7 ggtctctttcagttataagtagtagtgccgcaggtaaccgccagtctaaaaggcttacct 66
||||||||||||||||||||||||||||||||||||||| | || | || ||||||
Sbjct: 12 ggtctctttcagttataagtagtagtgccgcaggtaaccactcaaatatatggtttacct 71
Query: 67 actgccttctgcttaaaattgaaatattgatg 98
||||||||||||||| ||||||||||| ||||
Sbjct: 72 actgccttctgcttagaattgaaatatcgatg 103
>RF00838;mir-252;ABEG01023523.1/4749-4856 135651:Caenorhabditis
brenneri
Length = 108
Score = 85.7 bits (43), Expect = 1e-16
Identities = 75/85 (88%), Gaps = 3/85 (3%)
Strand = Plus / Plus
Query: 7 ggtctctttcagttataagtagtagtgccgcaggtaaccgccagtctaaaaggcttacct 66
|||||||||||||||||||||||||||||||||||||||| | | || || ||||||
Sbjct: 12 ggtctctttcagttataagtagtagtgccgcaggtaaccg---atttcaatggtttacct 68
Query: 67 actgccttctgcttaaaattgaaat 91
||||||| ||||||| |||||||||
Sbjct: 69 actgcctcctgcttagaattgaaat 93
>RF00838;mir-252;CAAC02000450.1/1710699-1710587
6238:Caenorhabditis briggsae
Length = 113
Score = 65.9 bits (33), Expect = 9e-11
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 7 ggtctctttcagttataagtagtagtgccgcaggtaaccgc 47
||||||| ||||||||||||||||||||||||||||||||
Sbjct: 12 ggtctctcccagttataagtagtagtgccgcaggtaaccgc 52
>RF00838;mir-252;ABLE02011229.1/3010-3114 281687:Caenorhabditis
japonica
Length = 105
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 19 ttataagtagtagtgccgcaggtaac 44
||||||||||||||||||||||||||
Sbjct: 24 ttataagtagtagtgccgcaggtaac 49
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 61 ttacctactgccttctgcttaaaattg 87
||||||||||||| |||||||||||||
Sbjct: 60 ttacctactgcctcctgcttaaaattg 86
>RF00838;mir-252;ABKE01000496.1/4965-5072 54126:Pristionchus
pacificus
Length = 108
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 22 taagtagtagtgccgcaggtaacc 45
||||||||||||||||||||||||
Sbjct: 26 taagtagtagtgccgcaggtaacc 49
>RF00838;mir-252;AAQA01000035.1/130050-130151 6279:Brugia malayi
Length = 102
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 taagtagtagtgccgcaggtaac 44
|||||||||||||||||||||||
Sbjct: 25 taagtagtagtgccgcaggtaac 47
>RF00838;mir-252;ABJB010205097.1/5176-5282 6945:Ixodes scapularis
(black-legged tick)
Length = 107
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 taagtagtagtgccgcaggtaa 43
||||||||||||||||||||||
Sbjct: 27 taagtagtagtgccgcaggtaa 48
