miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00834;mir-268;AC084551.1/15618-15523 6238:Caenorhabditis
briggsae
Length = 96
Score = 109 bits (55), Expect = 6e-24
Identities = 75/79 (94%), Gaps = 2/79 (2%)
Strand = Plus / Plus
Query: 1 ggaagtggctttgaagcggcaagaattagaagcag-tttggtgtcagacacact-actca 58
||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||| |
Sbjct: 1 ggaagtgtctttgaagcggcaagaattagaagcagttttggtgtcagacacactcactga 60
Query: 59 ctcactgcttcttgttttt 77
|||||||||||||||||||
Sbjct: 61 ctcactgcttcttgttttt 79
>RF00834;mir-268;ABEG01016616.1/1631-1543 135651:Caenorhabditis
brenneri
Length = 89
Score = 91.7 bits (46), Expect = 2e-18
Identities = 53/54 (98%), Gaps = 1/54 (1%)
Strand = Plus / Plus
Query: 1 ggaagtggctttgaagcggcaagaattagaagcag-tttggtgtcagacacact 53
||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 ggaagtggctttgaagcggcaagaattagaagcagttttggtgtcagacacact 54
>RF00834;mir-268;AAGD02001159.1/8939-8861 31234:Caenorhabditis
remanei
Length = 79
Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 ggaagtggctttgaagcggcaagaattaga 30
||||||||||||||||||||||||||||||
Sbjct: 1 ggaagtggctttgaagcggcaagaattaga 30
>RF00834;mir-268;ABLE02000627.1/8277-8182 281687:Caenorhabditis
japonica
Length = 96
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 1 ggaagtggctttgaagcggcaagaattag 29
|||||||||||||||||||||||||||||
Sbjct: 1 ggaagtggctttgaagcggcaagaattag 29
>RF00834;mir-268;ABDH01039062.1/1283-1239 433724:termite gut
metagenome
Length = 45
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 tggctttgaagcggcaagaatt 27
||||||||||||||||||||||
Sbjct: 6 tggctttgaagcggcaagaatt 27
