miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00797;mir-355;Z70037.1/4531-4414 6239:Caenorhabditis elegans
Length = 118
Score = 218 bits (110), Expect = 1e-56
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 1 aataatgtcaagaattgaatggtttgttttagcctgagctatgagtcatcggaatatgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 aataatgtcaagaattgaatggtttgttttagcctgagctatgagtcatcggaatatgca 68
Query: 61 tagcttcttgctaaaacatgccaatcaatcttaattgacgaagtttttga 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 tagcttcttgctaaaacatgccaatcaatcttaattgacgaagtttttga 118
>RF00797;mir-355;CAAC02000450.1/748458-748341 6238:Caenorhabditis
briggsae
Length = 118
Score = 63.9 bits (32), Expect = 4e-10
Identities = 60/68 (88%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 19 atggtttgttttagcctgagctatgagtcatcggaatatgcatagcttcttgctaaaaca 78
||||||||||||||||||||||||| || || | |||| ||||||| ||||||||||||
Sbjct: 29 atggtttgttttagcctgagctatgtgttat-tgcatattcatagctacttgctaaaaca 87
Query: 79 tgccaatc 86
| ||||||
Sbjct: 88 taccaatc 95
>RF00797;mir-355;AAGD02000378.1/7048-7160 31234:Caenorhabditis
remanei
Length = 113
Score = 60.0 bits (30), Expect = 6e-09
Identities = 61/70 (87%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 17 gaatggtttgttttagcctgagctatgagtcatcggaatatgcatagcttcttgctaaaa 76
||||||||||||||||||||||||||| || || | | || |||||||||||| |||||
Sbjct: 25 gaatggtttgttttagcctgagctatgtgttat-tgcacatacatagcttcttgttaaaa 83
Query: 77 catgccaatc 86
||| ||||||
Sbjct: 84 cataccaatc 93
>RF00797;mir-355;ABLE02017385.1/2522-2405 281687:Caenorhabditis
japonica
Length = 118
Score = 60.0 bits (30), Expect = 6e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 14 attgaatggtttgttttagcctgagctatg 43
||||||||||||||||||||||||||||||
Sbjct: 24 attgaatggtttgttttagcctgagctatg 53
>RF00797;mir-355;ABEG01002692.1/24539-24424 135651:Caenorhabditis
brenneri
Length = 116
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 17 gaatggtttgttttagcctgagctatg 43
|||||||||||||||||||||||||||
Sbjct: 26 gaatggtttgttttagcctgagctatg 52
