miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00790;mir-358;AF022973.2/41094-40983 6239:Caenorhabditis elegans
          Length = 112

 Score =  218 bits (110), Expect = 1e-56
 Identities = 110/110 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaactcgcgacggctggcgacctggccaggcattccaactgtcaaacttacaaagctttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aaactcgcgacggctggcgacctggccaggcattccaactgtcaaacttacaaagctttc 60

                                                             
Query: 61  tcgacaattggtatccctgtcaaggtctcaatccgttcagcgaattcgtt 110
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tcgacaattggtatccctgtcaaggtctcaatccgttcagcgaattcgtt 110




>RF00790;mir-358;AAGD02001646.1/15888-15778 31234:Caenorhabditis
          remanei
          Length = 111

 Score = 67.9 bits (34), Expect = 3e-11
 Identities = 71/81 (87%), Gaps = 3/81 (3%)
 Strand = Plus / Plus

                                                                      
Query: 15 tggcgacctggccaggcattccaactgtcaaacttacaaagctttctcg-acaattggta 73
          ||||||||||||||||||||||||||||| | |  |  |  |||| ||| ||||||||||
Sbjct: 15 tggcgacctggccaggcattccaactgtccatccaagta--ctttatcggacaattggta 72

                               
Query: 74 tccctgtcaaggtctcaatcc 94
          |||||||||||||||||||||
Sbjct: 73 tccctgtcaaggtctcaatcc 93