miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00774;mir-360;AC006726.1/6709-6821 6239:Caenorhabditis elegans
Length = 113
Score = 218 bits (110), Expect = 1e-56
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 1 cattctgttaggaagcatcaatgtgttgtgaccgttgttacggtcaatttgcaaattgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cattctgttaggaagcatcaatgtgttgtgaccgttgttacggtcaatttgcaaattgaa 60
Query: 61 aaaatgaccgtaatcccgttcacaatacattgttcgttttctccaaaggt 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaaatgaccgtaatcccgttcacaatacattgttcgttttctccaaaggt 110
>RF00774;mir-360;ABEG01019350.1/5390-5282 135651:Caenorhabditis
brenneri
Length = 109
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 65 tgaccgtaatcccgttcacaatacattgtt 94
||||||||||||||||||||| ||||||||
Sbjct: 61 tgaccgtaatcccgttcacaacacattgtt 90
>RF00774;mir-360;CAAC02000521.1/3689146-3689258
6238:Caenorhabditis briggsae
Length = 113
Score = 52.0 bits (26), Expect = 2e-06
Identities = 54/61 (88%), Gaps = 3/61 (4%)
Strand = Plus / Plus
Query: 26 ttgtgaccgttgttacggtcaatttgcaaat-tgaaaaaatgaccgtaatcccgttcaca 84
|||||||||||||||||||||||| || | ||| | ||||||||||||||||||||||
Sbjct: 27 ttgtgaccgttgttacggtcaatt--catgtctgacacaatgaccgtaatcccgttcaca 84
Query: 85 a 85
|
Sbjct: 85 a 85
>RF00774;mir-360;AAGD02000028.1/247908-247796 31234:Caenorhabditis
remanei
Length = 113
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 26 ttgtgaccgttgttacggtcaattt 50
|||||||||||||||||||||||||
Sbjct: 27 ttgtgaccgttgttacggtcaattt 51
>RF00774;mir-360;ABLE02005168.1/2030-1926 281687:Caenorhabditis
japonica
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 26 ttgtgaccgttgttacggtcaa 47
||||||||||||||||||||||
Sbjct: 25 ttgtgaccgttgttacggtcaa 46
