miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00894;mir-790;U61944.1/28361-28431 6239:Caenorhabditis elegans
Length = 71
Score = 139 bits (70), Expect = 5e-33
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 1 gccggcttggcactcgcgaacaccgcgatttcacttataactcgcggcgttagctctgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gccggcttggcactcgcgaacaccgcgatttcacttataactcgcggcgttagctctgtg 60
Query: 61 tcaaaccggc 70
||||||||||
Sbjct: 61 tcaaaccggc 70
>RF00894;mir-790;ABEG01007585.1/12191-12261 135651:Caenorhabditis
brenneri
Length = 71
Score = 65.9 bits (33), Expect = 6e-11
Identities = 49/53 (92%), Gaps = 1/53 (1%)
Strand = Plus / Plus
Query: 5 gcttggcactcgcgaacaccgcgatttcact-tataactcgcggcgttagctc 56
||||||||||||||||||||||||| | ||| ||||| |||||||||||||||
Sbjct: 5 gcttggcactcgcgaacaccgcgatctaactgtataaatcgcggcgttagctc 57
>RF00894;mir-790;CAAC02000563.1/418688-418615 6238:Caenorhabditis
briggsae
Length = 74
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 gcttggcactcgcgaacaccgcgat 29
|||||||||||||||||||||||||
Sbjct: 5 gcttggcactcgcgaacaccgcgat 29
>RF00894;mir-790;AAGD02004629.1/917-847 31234:Caenorhabditis
remanei
Length = 71
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 gcttggcactcgcgaacaccgcgat 29
|||||||||||||||||||||||||
Sbjct: 5 gcttggcactcgcgaacaccgcgat 29
>RF00894;mir-790;CAAC02000563.1/419309-419243 6238:Caenorhabditis
briggsae
Length = 67
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 gcttggcactcgcgaacaccgcg 27
|||||||||||||||||||||||
Sbjct: 5 gcttggcactcgcgaacaccgcg 27
>RF00894;mir-790;ABLE02006395.1/386-311 281687:Caenorhabditis
japonica
Length = 76
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 gcttggcactcgcgaacaccgcg 27
|||||||||||||||||||||||
Sbjct: 5 gcttggcactcgcgaacaccgcg 27
