miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00711;mir-449;AAGD02002335.1/13539-13618 31234:Caenorhabditis
remanei
Length = 80
Score = 159 bits (80), Expect = 7e-39
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 4 cggtgctcgagaggcagtgtggttagctggttgcatattgaattgacaacggctaccttc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cggtgctcgagaggcagtgtggttagctggttgcatattgaattgacaacggctaccttc 60
Query: 64 actgccaccccgaacatgta 83
||||||||||||||||||||
Sbjct: 61 actgccaccccgaacatgta 80
>RF00711;mir-449;AC006761.1/23565-23479 6239:Caenorhabditis
elegans
Length = 87
Score = 127 bits (64), Expect = 3e-29
Identities = 73/76 (96%)
Strand = Plus / Plus
Query: 7 tgctcgagaggcagtgtggttagctggttgcatattgaattgacaacggctaccttcact 66
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 8 tgctcgagaggcagtgtggttagctggttgcatatttccttgacaacggctaccttcact 67
Query: 67 gccaccccgaacatgt 82
||||||||||||||||
Sbjct: 68 gccaccccgaacatgt 83
>RF00711;mir-449;ABLE02004150.1/46650-46564 281687:Caenorhabditis
japonica
Length = 87
Score = 115 bits (58), Expect = 1e-25
Identities = 76/82 (92%)
Strand = Plus / Plus
Query: 1 ggacggtgctcgagaggcagtgtggttagctggttgcatattgaattgacaacggctacc 60
|||||||||||| |||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 2 ggacggtgctcgggaggcagtgtggttagctggttgcatgatgttttgacaacggctacc 61
Query: 61 ttcactgccaccccgaacatgt 82
|||||||||||||||| |||||
Sbjct: 62 ttcactgccaccccgatcatgt 83
>RF00711;mir-449;AC084584.1/32185-32101 6238:Caenorhabditis
briggsae
Length = 85
Score = 97.6 bits (49), Expect = 2e-20
Identities = 68/73 (93%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 14 gaggcagtgtggttagctggttgcatattgaa-ttgacaacggctaccttcactgccacc 72
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 13 gaggcagtgtggttagctggttgcatacacaggttgacaacggctaccttcactgccacc 72
Query: 73 ccgaacatgtagt 85
|||||||||||||
Sbjct: 73 ccgaacatgtagt 85
>RF00711;mir-449;BABH01019946.1/3350-3261 7091:Bombyx mori
(domestic silkworm)
Length = 90
Score = 44.1 bits (22), Expect = 3e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 16 ggcagtgtggttagctggttgcatattgaattgacaac 53
||||||||||||||||||||| ||| ||| |||||||
Sbjct: 17 ggcagtgtggttagctggttgtgtatggaaatgacaac 54
