miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00685;mir-36;AAGD02001682.1/68489-68395 31234:Caenorhabditis
remanei
Length = 95
Score = 188 bits (95), Expect = 1e-47
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 4 attatctggtcggatcggacctccactgattttcgcttcggtgatatttcaagaacgatt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 attatctggtcggatcggacctccactgattttcgcttcggtgatatttcaagaacgatt 60
Query: 64 atcaccgggtgaaaatcagggcaggtccgattccc 98
|||||||||||||||||||||||||||||||||||
Sbjct: 61 atcaccgggtgaaaatcagggcaggtccgattccc 95
>RF00685;mir-36;AAGD02001682.1/66886-66788 31234:Caenorhabditis
remanei
Length = 99
Score = 125 bits (63), Expect = 1e-28
Identities = 81/87 (93%)
Strand = Plus / Plus
Query: 11 ggtcggatcggacctccactgattttcgcttcggtgatatttcaagaacgattatcaccg 70
||||||||||||||| ||||| |||||||| |||||||| ||| |||| |||||||||||
Sbjct: 8 ggtcggatcggacctacactggttttcgctgcggtgatacttcgagaatgattatcaccg 67
Query: 71 ggtgaaaatcagggcaggtccgattcc 97
|||||||||||||||||||||||||||
Sbjct: 68 ggtgaaaatcagggcaggtccgattcc 94
>RF00685;mir-36;AAGD02001682.1/67297-67199 31234:Caenorhabditis
remanei
Length = 99
Score = 109 bits (55), Expect = 8e-24
Identities = 79/87 (90%)
Strand = Plus / Plus
Query: 11 ggtcggatcggacctccactgattttcgcttcggtgatatttcaagaacgattatcaccg 70
||||||||||| ||||||||| ||||||| ||||| |||||||||| | |||||||||||
Sbjct: 8 ggtcggatcggccctccactggttttcgcctcggtcatatttcaagtatgattatcaccg 67
Query: 71 ggtgaaaatcagggcaggtccgattcc 97
|||||||||||| ||||| ||||||||
Sbjct: 68 ggtgaaaatcagagcagggccgattcc 94
>RF00685;mir-36;AAGD02001682.1/68606-68507 31234:Caenorhabditis
remanei
Length = 100
Score = 91.7 bits (46), Expect = 2e-18
Identities = 80/90 (88%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 9 ctggtcggatcggacctccactgattttcgcttcggtgatatttca-agaacgattatca 67
||||||||||||||||||||||| |||| ||| |||| ||||||| |||| | |||||
Sbjct: 6 ctggtcggatcggacctccactggtttttgctgcggtaatatttctcagaatcaatatca 65
Query: 68 ccgggtgaaaatcagggcaggtccgattcc 97
|||||| |||||||||||||||||||||||
Sbjct: 66 ccgggtaaaaatcagggcaggtccgattcc 95
>RF00685;mir-36;AAGD02001682.1/68131-68034 31234:Caenorhabditis
remanei
Length = 98
Score = 69.9 bits (35), Expect = 7e-12
Identities = 74/87 (85%)
Strand = Plus / Plus
Query: 8 tctggtcggatcggacctccactgattttcgcttcggtgatatttcaagaacgattatca 67
|||||||||||||| | | ||||| || |||| |||| ||||||||| | ||||||||
Sbjct: 4 tctggtcggatcggccattcactggttctcgccgcggtcatatttcaaatatgattatca 63
Query: 68 ccgggtgaaaatcagggcaggtccgat 94
||||||||||||||| ||||| |||||
Sbjct: 64 ccgggtgaaaatcagagcagggccgat 90
>RF00685;mir-36;AAGD02001682.1/67909-67811 31234:Caenorhabditis
remanei
Length = 99
Score = 61.9 bits (31), Expect = 2e-09
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 41 tcggtgatatttcaagaacgattatcaccgggtgaaaatcagggcaggtcc 91
||||| |||||||||| ||||||||||||||||||| ||| | ||||||||
Sbjct: 38 tcggttatatttcaagcacgattatcaccgggtgaatatcggtgcaggtcc 88
>RF00685;mir-36;CAAC02000527.1/132218-132318 6238:Caenorhabditis
briggsae
Length = 101
Score = 54.0 bits (27), Expect = 4e-07
Identities = 57/66 (86%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 15 ggatcggacctccactgattttcgcttcggtgatatttcaa--gaacgattatcaccggg 72
||||||||||||||| |||||| || |||||||| | ||| | |||||||||||||||
Sbjct: 12 ggatcggacctccaccgattttttctgcggtgatactccaatgggacgattatcaccggg 71
Query: 73 tgaaaa 78
||||||
Sbjct: 72 tgaaaa 77
>RF00685;mir-36;AAGD02001682.1/67544-67446 31234:Caenorhabditis
remanei
Length = 99
Score = 46.1 bits (23), Expect = 1e-04
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 41 tcggtgatatttcaagaacgattatcaccgggtgaaaatcagggcaggtcc 91
||||| ||||||| || | ||||||||||||||||| ||| | ||||||||
Sbjct: 38 tcggttatatttctagtatgattatcaccgggtgaacatcggtgcaggtcc 88
>RF00685;mir-36;CAAC02000450.1/1779180-1779278 6238:Caenorhabditis
briggsae
Length = 99
Score = 46.1 bits (23), Expect = 1e-04
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 33 ttttcgcttcggtgatatttcaagaacgattatcaccgggtgaaaat 79
|||| |||||||||||||| |||| | ||||||||||||||||||
Sbjct: 30 tttttgcttcggtgatattcgaagagccgttatcaccgggtgaaaat 76
>RF00685;mir-36;CAAC02000527.1/131292-131393 6238:Caenorhabditis
briggsae
Length = 102
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 60 gattatcaccgggtgaaaatcagggcaggtccga 93
|||||||||||||||| ||| ||| |||||||||
Sbjct: 60 gattatcaccgggtgacaattaggacaggtccga 93
