miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00685;mir-36;AAGD02001682.1/68489-68395 31234:Caenorhabditis
remanei
Length = 95
Score = 135 bits (68), Expect = 1e-31
Identities = 80/84 (95%)
Strand = Plus / Plus
Query: 3 ggtcggatcggacctccactggttttagcttcggtgatatttctagaatgattatcaccg 62
||||||||||||||||||||| |||| |||||||||||||||| |||| |||||||||||
Sbjct: 8 ggtcggatcggacctccactgattttcgcttcggtgatatttcaagaacgattatcaccg 67
Query: 63 ggtgaaaatcagggcaggtccgat 86
||||||||||||||||||||||||
Sbjct: 68 ggtgaaaatcagggcaggtccgat 91
>RF00685;mir-36;AAGD02001682.1/66886-66788 31234:Caenorhabditis
remanei
Length = 99
Score = 131 bits (66), Expect = 2e-30
Identities = 81/86 (94%)
Strand = Plus / Plus
Query: 1 tcggtcggatcggacctccactggttttagcttcggtgatatttctagaatgattatcac 60
||||||||||||||||| |||||||||| ||| |||||||| ||| ||||||||||||||
Sbjct: 6 tcggtcggatcggacctacactggttttcgctgcggtgatacttcgagaatgattatcac 65
Query: 61 cgggtgaaaatcagggcaggtccgat 86
||||||||||||||||||||||||||
Sbjct: 66 cgggtgaaaatcagggcaggtccgat 91
>RF00685;mir-36;AAGD02001682.1/68606-68507 31234:Caenorhabditis
remanei
Length = 100
Score = 105 bits (53), Expect = 1e-22
Identities = 78/85 (91%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 3 ggtcggatcggacctccactggttttagcttcggtgatatttct-agaatgattatcacc 61
|||||||||||||||||||||||||| ||| |||| |||||||| ||||| | |||||||
Sbjct: 8 ggtcggatcggacctccactggtttttgctgcggtaatatttctcagaatcaatatcacc 67
Query: 62 gggtgaaaatcagggcaggtccgat 86
|||| ||||||||||||||||||||
Sbjct: 68 gggtaaaaatcagggcaggtccgat 92
>RF00685;mir-36;AAGD02001682.1/67297-67199 31234:Caenorhabditis
remanei
Length = 99
Score = 103 bits (52), Expect = 4e-22
Identities = 76/84 (90%)
Strand = Plus / Plus
Query: 3 ggtcggatcggacctccactggttttagcttcggtgatatttctagaatgattatcaccg 62
||||||||||| |||||||||||||| || ||||| ||||||| || |||||||||||||
Sbjct: 8 ggtcggatcggccctccactggttttcgcctcggtcatatttcaagtatgattatcaccg 67
Query: 63 ggtgaaaatcagggcaggtccgat 86
|||||||||||| ||||| |||||
Sbjct: 68 ggtgaaaatcagagcagggccgat 91
>RF00685;mir-36;AAGD02001682.1/68131-68034 31234:Caenorhabditis
remanei
Length = 98
Score = 71.9 bits (36), Expect = 1e-12
Identities = 75/88 (85%)
Strand = Plus / Plus
Query: 3 ggtcggatcggacctccactggttttagcttcggtgatatttctagaatgattatcaccg 62
||||||||||| | | |||||||| | || |||| ||||||| | |||||||||||||
Sbjct: 7 ggtcggatcggccattcactggttctcgccgcggtcatatttcaaatatgattatcaccg 66
Query: 63 ggtgaaaatcagggcaggtccgatccca 90
|||||||||||| ||||| |||||||||
Sbjct: 67 ggtgaaaatcagagcagggccgatccca 94
>RF00685;mir-36;AAGD02001682.1/67544-67446 31234:Caenorhabditis
remanei
Length = 99
Score = 63.9 bits (32), Expect = 3e-10
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 33 tcggtgatatttctagaatgattatcaccgggtgaaaatcagggcaggtccgatcc 88
||||| |||||||||| ||||||||||||||||||| ||| | |||||||| ||||
Sbjct: 38 tcggttatatttctagtatgattatcaccgggtgaacatcggtgcaggtccaatcc 93
>RF00685;mir-36;ABEG01007334.1/1414-1515 135651:Caenorhabditis
brenneri
Length = 102
Score = 54.0 bits (27), Expect = 3e-07
Identities = 59/67 (88%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 7 ggatcggacctccactggttttagcttcggtgatatttct-ag-aatgattatcaccggg 64
||||||| ||| | |||||||| || ||||||||||||| || ||||||||||||||||
Sbjct: 12 ggatcgggcctgcgctggtttttgccgcggtgatatttctgagcaatgattatcaccggg 71
Query: 65 tgaaaat 71
|||||||
Sbjct: 72 tgaaaat 78
>RF00685;mir-36;AAGD02001682.1/67909-67811 31234:Caenorhabditis
remanei
Length = 99
Score = 48.1 bits (24), Expect = 2e-05
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 33 tcggtgatatttctagaatgattatcaccgggtgaaaatcagggcaggtccgatcc 88
||||| ||||||| || | ||||||||||||||||| ||| | |||||||| ||||
Sbjct: 38 tcggttatatttcaagcacgattatcaccgggtgaatatcggtgcaggtccaatcc 93
>RF00685;mir-36;AAGD02001682.1/68394-68296 31234:Caenorhabditis
remanei
Length = 99
Score = 48.1 bits (24), Expect = 2e-05
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 21 ctggttttagcttcggtgatatttctagaatgattatcaccgggtgaaaatcagggcagg 80
|||||||| || ||||| ||||||| || ||| |||||||||||||| ||| | |||||
Sbjct: 26 ctggtttttgcctcggttatatttcaagtgtgactatcaccgggtgaacatcggtgcagg 85
Query: 81 tccgatcc 88
||| ||||
Sbjct: 86 tccaatcc 93
>RF00685;mir-36;CAAC02000527.1/131292-131393 6238:Caenorhabditis
briggsae
Length = 102
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 52 gattatcaccgggtgaaaatcagggcaggtccga 85
|||||||||||||||| ||| ||| |||||||||
Sbjct: 60 gattatcaccgggtgacaattaggacaggtccga 93
>RF00685;mir-36;ABEG01007334.1/2290-2391 135651:Caenorhabditis
brenneri
Length = 102
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 50 atgattatcaccgggtgaaaat 71
||||||||||||||||||||||
Sbjct: 57 atgattatcaccgggtgaaaat 78
>RF00685;mir-36;ABEG01007334.1/4671-4772 135651:Caenorhabditis
brenneri
Length = 102
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 50 atgattatcaccgggtgaaaat 71
||||||||||||||||||||||
Sbjct: 57 atgattatcaccgggtgaaaat 78
>RF00406;SNORA42;AAIY01362257.1/2532-2665 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 134
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 66 gaaaatcagggcaggtccgatcccat 91
|||||||| |||||||||||||||||
Sbjct: 6 gaaaatcatggcaggtccgatcccat 31
