miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00685;mir-36;AAGD02001682.1/67297-67199 31234:Caenorhabditis
remanei
Length = 99
Score = 180 bits (91), Expect = 2e-45
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 1 aggtcggatcggccctccactggttttcgcctcggtcatatttcaagtatgattatcacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 aggtcggatcggccctccactggttttcgcctcggtcatatttcaagtatgattatcacc 66
Query: 61 gggtgaaaatcagagcagggccgattccacc 91
|||||||||||||||||||||||||||||||
Sbjct: 67 gggtgaaaatcagagcagggccgattccacc 97
>RF00685;mir-36;AAGD02001682.1/68131-68034 31234:Caenorhabditis
remanei
Length = 98
Score = 131 bits (66), Expect = 2e-30
Identities = 84/90 (93%)
Strand = Plus / Plus
Query: 2 ggtcggatcggccctccactggttttcgcctcggtcatatttcaagtatgattatcaccg 61
||||||||||||| | |||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct: 7 ggtcggatcggccattcactggttctcgccgcggtcatatttcaaatatgattatcaccg 66
Query: 62 ggtgaaaatcagagcagggccgattccacc 91
|||||||||||||||||||||||| |||||
Sbjct: 67 ggtgaaaatcagagcagggccgatcccacc 96
>RF00685;mir-36;AAGD02001682.1/68489-68395 31234:Caenorhabditis
remanei
Length = 95
Score = 109 bits (55), Expect = 6e-24
Identities = 79/87 (90%)
Strand = Plus / Plus
Query: 2 ggtcggatcggccctccactggttttcgcctcggtcatatttcaagtatgattatcaccg 61
||||||||||| ||||||||| ||||||| ||||| |||||||||| | |||||||||||
Sbjct: 8 ggtcggatcggacctccactgattttcgcttcggtgatatttcaagaacgattatcaccg 67
Query: 62 ggtgaaaatcagagcagggccgattcc 88
|||||||||||| ||||| ||||||||
Sbjct: 68 ggtgaaaatcagggcaggtccgattcc 94
>RF00685;mir-36;AAGD02001682.1/66886-66788 31234:Caenorhabditis
remanei
Length = 99
Score = 99.6 bits (50), Expect = 6e-21
Identities = 80/90 (88%)
Strand = Plus / Plus
Query: 2 ggtcggatcggccctccactggttttcgcctcggtcatatttcaagtatgattatcaccg 61
||||||||||| ||| ||||||||||||| |||| ||| ||| || |||||||||||||
Sbjct: 8 ggtcggatcggacctacactggttttcgctgcggtgatacttcgagaatgattatcaccg 67
Query: 62 ggtgaaaatcagagcagggccgattccacc 91
|||||||||||| ||||| |||||||||||
Sbjct: 68 ggtgaaaatcagggcaggtccgattccacc 97
>RF00685;mir-36;AAGD02001682.1/67544-67446 31234:Caenorhabditis
remanei
Length = 99
Score = 71.9 bits (36), Expect = 1e-12
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 20 ctggttttcgcctcggtcatatttcaagtatgattatcaccgggtgaa 67
||||||||| ||||||| ||||||| ||||||||||||||||||||||
Sbjct: 26 ctggttttcacctcggttatatttctagtatgattatcaccgggtgaa 73
>RF00685;mir-36;AAGD02001682.1/68606-68507 31234:Caenorhabditis
remanei
Length = 100
Score = 65.9 bits (33), Expect = 8e-11
Identities = 76/89 (85%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 2 ggtcggatcggccctccactggttttcgcctcggtcatatttca-agtatgattatcacc 60
||||||||||| |||||||||||||| || |||| ||||||| || || | |||||||
Sbjct: 8 ggtcggatcggacctccactggtttttgctgcggtaatatttctcagaatcaatatcacc 67
Query: 61 gggtgaaaatcagagcagggccgattcca 89
|||| |||||||| ||||| |||||||||
Sbjct: 68 gggtaaaaatcagggcaggtccgattcca 96
>RF00685;mir-36;AAGD02001682.1/68394-68296 31234:Caenorhabditis
remanei
Length = 99
Score = 63.9 bits (32), Expect = 3e-10
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 20 ctggttttcgcctcggtcatatttcaagtatgattatcaccgggtgaa 67
|||||||| |||||||| ||||||||||| ||| ||||||||||||||
Sbjct: 26 ctggtttttgcctcggttatatttcaagtgtgactatcaccgggtgaa 73
>RF00685;mir-36;AAGD02001682.1/67136-67038 31234:Caenorhabditis
remanei
Length = 99
Score = 61.9 bits (31), Expect = 1e-09
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 20 ctggttttcgcctcggtcatatttcaagtatgattatcaccgggtga 66
||||||||| ||||||| ||||||||| ||||||||||| |||||||
Sbjct: 26 ctggttttcacctcggttatatttcaattatgattatcatcgggtga 72
>RF00685;mir-36;AAGD02001682.1/67909-67811 31234:Caenorhabditis
remanei
Length = 99
Score = 56.0 bits (28), Expect = 8e-08
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 20 ctggttttcgcctcggtcatatttcaagtatgattatcaccgggtgaa 67
|||||||| ||||||| |||||||||| | |||||||||||||||||
Sbjct: 26 ctggtttttacctcggttatatttcaagcacgattatcaccgggtgaa 73
>RF00685;mir-36;ABEG01007334.1/1414-1515 135651:Caenorhabditis
brenneri
Length = 102
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 49 atgattatcaccgggtgaaaat 70
||||||||||||||||||||||
Sbjct: 57 atgattatcaccgggtgaaaat 78
>RF00685;mir-36;ABEG01007334.1/2290-2391 135651:Caenorhabditis
brenneri
Length = 102
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 49 atgattatcaccgggtgaaaat 70
||||||||||||||||||||||
Sbjct: 57 atgattatcaccgggtgaaaat 78
>RF00685;mir-36;ABEG01007334.1/4671-4772 135651:Caenorhabditis
brenneri
Length = 102
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 49 atgattatcaccgggtgaaaat 70
||||||||||||||||||||||
Sbjct: 57 atgattatcaccgggtgaaaat 78
