miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>38495_crm-mir-35d-1:mirbase
Length = 91
Score = 131 bits (66), Expect = 9e-32
Identities = 84/90 (93%)
Strand = Plus / Plus
Query: 2 ggtcggatcggccattcactggttctcgccgcggtcatatttcaaatatgattatcaccg 61
||||||||||||| | |||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct: 2 ggtcggatcggccctccactggttttcgcctcggtcatatttcaagtatgattatcaccg 61
Query: 62 ggtgaaaatcagagcagggccgatcccacc 91
|||||||||||||||||||||||| |||||
Sbjct: 62 ggtgaaaatcagagcagggccgattccacc 91
>38492_crm-mir-35c-1:mirbase
Length = 94
Score = 77.8 bits (39), Expect = 1e-15
Identities = 78/91 (85%)
Strand = Plus / Plus
Query: 2 ggtcggatcggccattcactggttctcgccgcggtcatatttcaaatatgattatcaccg 61
||||||||||| | | |||||||| |||| ||||| ||| ||| | |||||||||||||
Sbjct: 3 ggtcggatcggacctacactggttttcgctgcggtgatacttcgagaatgattatcaccg 62
Query: 62 ggtgaaaatcagagcagggccgatcccaccg 92
|||||||||||| ||||| ||||| ||||||
Sbjct: 63 ggtgaaaatcagggcaggtccgattccaccg 93
>38494_crm-mir-35c-3:mirbase
Length = 95
Score = 71.9 bits (36), Expect = 8e-14
Identities = 75/88 (85%)
Strand = Plus / Plus
Query: 2 ggtcggatcggccattcactggttctcgccgcggtcatatttcaaatatgattatcaccg 61
||||||||||| | | |||||||| | || |||| ||||||| | |||||||||||||
Sbjct: 3 ggtcggatcggacctccactggttttagcttcggtgatatttctagaatgattatcaccg 62
Query: 62 ggtgaaaatcagagcagggccgatccca 89
|||||||||||| ||||| |||||||||
Sbjct: 63 ggtgaaaatcagggcaggtccgatccca 90
>38493_crm-mir-35c-2:mirbase
Length = 117
Score = 65.9 bits (33), Expect = 5e-12
Identities = 72/85 (84%)
Strand = Plus / Plus
Query: 1 tggtcggatcggccattcactggttctcgccgcggtcatatttcaaatatgattatcacc 60
|||||||||||| | | ||||| || |||| |||| ||||||||| | ||||||||||
Sbjct: 10 tggtcggatcggacctccactgattttcgcttcggtgatatttcaagaacgattatcacc 69
Query: 61 gggtgaaaatcagagcagggccgat 85
||||||||||||| ||||| |||||
Sbjct: 70 gggtgaaaatcagggcaggtccgat 94
>38491_crm-mir-35b:mirbase
Length = 94
Score = 63.9 bits (32), Expect = 2e-11
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 33 cggtcatatttcaaatatgattatcaccgggtgaaaatcagagcagggccgatcccaccg 92
|||| ||||||||| |||||||||||||||||||||||| ||||| |||||| |||||
Sbjct: 34 cggtgatatttcaagaatgattatcaccgggtgaaaatcaaggcaggtccgatctcaccg 93
>38490_crm-mir-35a-2:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 3e-04
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 20 ctggttctcgccgcggtcatatttcaaatatgattatcaccgggtgaa 67
|||||| || || |||| ||| ||||| | ||||||||||||||||||
Sbjct: 18 ctggttttcacctcggttatacttcaagtgtgattatcaccgggtgaa 65
