miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00685;mir-36;AAGD02001682.1/67443-67345 31234:Caenorhabditis
remanei
Length = 99
Score = 174 bits (88), Expect = 1e-43
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 1 atgacgggaaccgtgctggtttcgaactcggtaatagaccagaagaaagctatcaccggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 atgacgggaaccgtgctggtttcgaactcggtaatagaccagaagaaagctatcaccggg 69
Query: 61 tggaaactggtacgggtccccgagtcgt 88
||||||||||||||||||||||||||||
Sbjct: 70 tggaaactggtacgggtccccgagtcgt 97
>RF00685;mir-36;AAGD02001682.1/66080-65982 31234:Caenorhabditis
remanei
Length = 99
Score = 111 bits (56), Expect = 1e-24
Identities = 77/84 (91%)
Strand = Plus / Plus
Query: 3 gacgggaaccgtgctggtttcgaactcggtaatagaccagaagaaagctatcaccgggtg 62
||||| ||||||||||||||||| ||| || ||||||||| |||||||| ||||||| ||
Sbjct: 12 gacggaaaccgtgctggtttcgacctccgttatagaccagcagaaagctgtcaccggttg 71
Query: 63 gaaactggtacgggtccccgagtc 86
||||||||||||||||||||||||
Sbjct: 72 gaaactggtacgggtccccgagtc 95
>RF00685;mir-36;AAGD02001682.1/68294-68188 31234:Caenorhabditis
remanei
Length = 107
Score = 73.8 bits (37), Expect = 3e-13
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 50 ctatcaccgggtggaaactggtacgggtccccgagtc 86
|||||||||||||||||||||||||||||||||||||
Sbjct: 67 ctatcaccgggtggaaactggtacgggtccccgagtc 103
>RF00685;mir-36;AAGD02001682.1/66465-66360 31234:Caenorhabditis
remanei
Length = 106
Score = 65.9 bits (33), Expect = 8e-11
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 50 ctatcaccgggtggaaactggtacgggtccccgagtc 86
|||||||||||||||||||||| ||||||||||||||
Sbjct: 66 ctatcaccgggtggaaactggtgcgggtccccgagtc 102
>RF00685;mir-36;ABLE02007319.1/2630-2733 281687:Caenorhabditis
japonica
Length = 104
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 50 ctatcaccgggtggaaactggtacgggtccccga 83
||||||||||||||||||| | |||||||||||
Sbjct: 64 ctatcaccgggtggaaactagctcgggtccccga 97
