miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00685;mir-36;AAGD02000354.1/140549-140446 31234:Caenorhabditis
remanei
Length = 104
Score = 206 bits (104), Expect = 5e-53
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 10 gtttaacaggtccccatgaccttggtagttttccgccgcagtgatataccatcaatcaaa 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtttaacaggtccccatgaccttggtagttttccgccgcagtgatataccatcaatcaaa 60
Query: 70 acgatatcaccgggtgaaaaactaccaaggtcgggtcacctgtc 113
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgatatcaccgggtgaaaaactaccaaggtcgggtcacctgtc 104
>RF00685;mir-36;CAAC02000450.1/1779296-1779400 6238:Caenorhabditis
briggsae
Length = 105
Score = 65.9 bits (33), Expect = 1e-10
Identities = 67/77 (87%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 29 ccttggtagttttccgccgcagtgatataccatc-aatcaaaacgatatcaccgggtgaa 87
||||||| ||||| ||||| ||||||| | |||| || | | ||||||||||||||||||
Sbjct: 20 ccttggtggtttttcgccgtagtgatacaacatcgaagccatacgatatcaccgggtgaa 79
Query: 88 aaactaccaaggtcggg 104
||||| |||||||||||
Sbjct: 80 aaactcccaaggtcggg 96
>RF00685;mir-36;ABEG01005150.1/10268-10376 135651:Caenorhabditis
brenneri
Length = 109
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 72 gatatcaccgggtgaaaaactaccaaggtcg 102
||||||||||||||||||| ||||||||||
Sbjct: 68 gatatcaccgggtgaaaaatcaccaaggtcg 98
>RF00685;mir-36;ABLE02007319.1/3211-3309 281687:Caenorhabditis
japonica
Length = 99
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 cgatatcaccgggtgaaaaact 92
||||||||||||||||||||||
Sbjct: 57 cgatatcaccgggtgaaaaact 78
