miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00710;mir-44;AAGD02000348.1/78845-78938 31234:Caenorhabditis
remanei
Length = 94
Score = 186 bits (94), Expect = 4e-47
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 4 gagaatggccgatctggatgtgctcgttagtcatagacgaatcacagaaaacagtcatat 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gagaatggccgatctggatgtgctcgttagtcatagacgaatcacagaaaacagtcatat 60
Query: 64 gactagagacacattcagcttggcctggatctca 97
||||||||||||||||||||||||||||||||||
Sbjct: 61 gactagagacacattcagcttggcctggatctca 94
>RF00710;mir-44;Z70213.1/12643-12735 6239:Caenorhabditis elegans
Length = 93
Score = 67.9 bits (34), Expect = 2e-11
Identities = 74/85 (87%), Gaps = 3/85 (3%)
Strand = Plus / Plus
Query: 7 aatggccgatctggatgtgctcgttagtcatagacgaatcacagaaaacagt-catatga 65
||||||| ||||||||||||||||| |||||||||| ||| ||| || |||||||
Sbjct: 4 aatggccaatctggatgtgctcgttggtcatagacg--tcaacacgaactgttcatatga 61
Query: 66 ctagagacacattcagcttggcctg 90
|||||||||||||||||||||||||
Sbjct: 62 ctagagacacattcagcttggcctg 86
>RF00710;mir-44;ABLE02021982.1/2149-2242 281687:Caenorhabditis
japonica
Length = 94
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 59 catatgactagagacacattcagcttggc 87
|||||||||||||||||||||||||||||
Sbjct: 56 catatgactagagacacattcagcttggc 84
>RF00710;mir-44;ABEG01005634.1/1647-1738 135651:Caenorhabditis
brenneri
Length = 92
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 61 tatgactagagacacattcagcttggc 87
|||||||||||||||||||||||||||
Sbjct: 56 tatgactagagacacattcagcttggc 82
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 ctggatgtgctcgttagtcatag 39
|||||||||||||||||||||||
Sbjct: 14 ctggatgtgctcgttagtcatag 36
>RF00710;mir-44;Z70213.1/3656-3563 6239:Caenorhabditis elegans
Length = 94
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 61 tatgactagagacacattcagcttggc 87
|||||||||||||||||||||||||||
Sbjct: 58 tatgactagagacacattcagcttggc 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 ctggatgtgctcgttagtcata 38
||||||||||||||||||||||
Sbjct: 14 ctggatgtgctcgttagtcata 35
>RF00710;mir-44;CAAC02000450.1/2301452-2301360 6238:Caenorhabditis
briggsae
Length = 93
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 61 tatgactagagacacattcagcttggc 87
|||||||||||||||||||||||||||
Sbjct: 57 tatgactagagacacattcagcttggc 83
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 ctggatgtgctcgttagtcatag 39
|||||||||||||||||||||||
Sbjct: 14 ctggatgtgctcgttagtcatag 36
>RF00710;mir-44;ABLE02021980.1/2278-2189 281687:Caenorhabditis
japonica
Length = 90
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 61 tatgactagagacacattcagcttggc 87
|||||||||||||||||||||||||||
Sbjct: 54 tatgactagagacacattcagcttggc 80
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 10 ggccgatctggatgtgctcgttagtcata 38
||||||||||| |||||||||||||||||
Sbjct: 7 ggccgatctgggtgtgctcgttagtcata 35
>RF00710;mir-44;ABKE01001765.1/17946-17852 54126:Pristionchus
pacificus
Length = 95
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 61 tatgactagagacacattcagcttgg 86
||||||||||||||||||||||||||
Sbjct: 58 tatgactagagacacattcagcttgg 83
