miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00710;mir-44;CAAC02000450.1/2301452-2301360 6238:Caenorhabditis
briggsae
Length = 93
Score = 127 bits (64), Expect = 3e-29
Identities = 82/88 (93%)
Strand = Plus / Plus
Query: 15 gtgccacgctggatgtgctcgttagtcataataacctcatttagtaaggcttatgactag 74
|||||||||||||||||||||||||||||| ||||||||| | | ||||||||||||||
Sbjct: 6 gtgccacgctggatgtgctcgttagtcatagtaacctcatcaattcaggcttatgactag 65
Query: 75 agacacattcagcttggcgccgaactat 102
||||||||||||||||||||| ||||||
Sbjct: 66 agacacattcagcttggcgccaaactat 93
>RF00710;mir-44;Z70213.1/3656-3563 6239:Caenorhabditis elegans
Length = 94
Score = 97.6 bits (49), Expect = 3e-20
Identities = 77/85 (90%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 15 gtgccacgctggatgtgctcgttagtcataataacct-catttagtaaggcttatgacta 73
||||||||||||||||||||||||||||||||| ||| || || |||| ||||||||
Sbjct: 6 gtgccacgctggatgtgctcgttagtcataatatcctccacaaagcaaggactatgacta 65
Query: 74 gagacacattcagcttggcgccgaa 98
|||||||||||||||||||||||||
Sbjct: 66 gagacacattcagcttggcgccgaa 90
>RF00710;mir-44;ABEG01005634.1/1647-1738 135651:Caenorhabditis
brenneri
Length = 92
Score = 83.8 bits (42), Expect = 4e-16
Identities = 73/82 (89%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 16 tgccacgctggatgtgctcgttagtcataataacctcatttagtaaggcttatgactaga 75
||||||||||||||||||||||||||||| |||||| || | | ||| ||||||||||
Sbjct: 7 tgccacgctggatgtgctcgttagtcatagtaacct-atcctgaacggcctatgactaga 65
Query: 76 gacacattcagcttggcgccga 97
||||||||||||||||| ||||
Sbjct: 66 gacacattcagcttggctccga 87
>RF00710;mir-44;ABLE02021982.1/2149-2242 281687:Caenorhabditis
japonica
Length = 94
Score = 63.9 bits (32), Expect = 4e-10
Identities = 69/79 (87%), Gaps = 3/79 (3%)
Strand = Plus / Plus
Query: 16 tgccacgctggatgtgctcgttagtcataataacctcatttagtaa--ggcttatgacta 73
|||||||||| ||||||||||||||||||| ||| ||| | || | ||| ||||||||
Sbjct: 7 tgccacgctgaatgtgctcgttagtcataaccacc-catatcgtcaagggcatatgacta 65
Query: 74 gagacacattcagcttggc 92
|||||||||||||||||||
Sbjct: 66 gagacacattcagcttggc 84
>RF00710;mir-44;ABKE01001765.1/17946-17852 54126:Pristionchus
pacificus
Length = 95
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 65 ttatgactagagacacattcagcttggcgccg 96
||||||||||||||||||||||||||| ||||
Sbjct: 57 ttatgactagagacacattcagcttggggccg 88
>RF00710;mir-44;AAGD02000348.1/78845-78938 31234:Caenorhabditis
remanei
Length = 94
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 66 tatgactagagacacattcagcttggc 92
|||||||||||||||||||||||||||
Sbjct: 58 tatgactagagacacattcagcttggc 84
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 23 ctggatgtgctcgttagtcata 44
||||||||||||||||||||||
Sbjct: 14 ctggatgtgctcgttagtcata 35
>RF00710;mir-44;ABLE02021980.1/2278-2189 281687:Caenorhabditis
japonica
Length = 90
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 66 tatgactagagacacattcagcttggc 92
|||||||||||||||||||||||||||
Sbjct: 54 tatgactagagacacattcagcttggc 80
>RF00710;mir-44;Z70213.1/12643-12735 6239:Caenorhabditis elegans
Length = 93
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 66 tatgactagagacacattcagcttggc 92
|||||||||||||||||||||||||||
Sbjct: 57 tatgactagagacacattcagcttggc 83
