miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>38157_cbr-mir-46:mirbase
Length = 94
Score = 85.7 bits (43), Expect = 6e-18
Identities = 69/77 (89%), Gaps = 3/77 (3%)
Strand = Plus / Plus
Query: 20 aagctgaagagagccgtctattgacagttcgtttctatacttatgtactgtcatggagtc 79
||||||||||||||||||||||||||||||| || | | |||| |||||||||||||
Sbjct: 13 aagctgaagagagccgtctattgacagttcgcttgt---ttcatgtgctgtcatggagtc 69
Query: 80 gctctcttcagatgatc 96
|||||||||||||||||
Sbjct: 70 gctctcttcagatgatc 86
>38283_cel-mir-46:mirbase
Length = 97
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 14 gaggtaaagctgaagagagccgtctattgacagttc 49
||||| ||||||||||||||||||||||||||||||
Sbjct: 3 gaggtgaagctgaagagagccgtctattgacagttc 38
Score = 61.9 bits (31), Expect = 9e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 67 ctgtcatggagtcgctctcttcagatgatcc 97
|||||||||||||||||||||||||||||||
Sbjct: 60 ctgtcatggagtcgctctcttcagatgatcc 90
>38284_cel-mir-47:mirbase
Length = 97
Score = 58.0 bits (29), Expect = 1e-09
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 23 ctgaagagagccgtctattgacagttcgtttctatacttatgtactgtcatggagtcgct 82
||||||||||| ||||||||||||| ||| || | | | ||||||||||||| ||||
Sbjct: 16 ctgaagagagcagtctattgacagtcggttactcgaaatctttactgtcatggaggcgct 75
Query: 83 ctcttcagatgat 95
|||||||||||||
Sbjct: 76 ctcttcagatgat 88
>38510_crm-mir-47:mirbase
Length = 105
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 65 tactgtcatggagtcgctctcttcagatgatc 96
||||||||||||| |||||||||||| |||||
Sbjct: 59 tactgtcatggaggcgctctcttcaggtgatc 90
>38603_ppc-mir-46:mirbase
Length = 111
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 68 tgtcatggagtcgctctcttcag 90
|||||||||||||||||||||||
Sbjct: 71 tgtcatggagtcgctctcttcag 93
>38158_cbr-mir-47:mirbase
Length = 93
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 65 tactgtcatggagtcgctctcttcag 90
||||||||||||| ||||||||||||
Sbjct: 54 tactgtcatggaggcgctctcttcag 79
