miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00826;mir-55;AAGD02007434.1/173562-173660 31234:Caenorhabditis
remanei
Length = 99
Score = 196 bits (99), Expect = 4e-50
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 8 agactcggaaagtcgcatgggactcggcagaagcacttggggtatacttcacagagtaac 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agactcggaaagtcgcatgggactcggcagaagcacttggggtatacttcacagagtaac 60
Query: 68 tatacccgtatttgtttctgctgagcccctgacaccagt 106
|||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tatacccgtatttgtttctgctgagcccctgacaccagt 99
>RF00826;mir-55;ABEG01013093.1/19279-19375 135651:Caenorhabditis
brenneri
Length = 97
Score = 67.9 bits (34), Expect = 3e-11
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 47 gggtatacttcacagagtaactatacccgtatttgtttctgctgagcccctgacacca 104
|||||||||||| ||||||||||||||||| | |||||||| ||||||||||||||
Sbjct: 38 gggtatacttcatcaagtaactatacccgtatatatttctgcttagcccctgacacca 95
>RF00826;mir-55;Z69788.1/18474-18378 6239:Caenorhabditis elegans
Length = 97
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 67 ctatacccgtatttgtttctgctgagcccct 97
|||||||||||| |||||||||||||||||
Sbjct: 58 ctatacccgtataagtttctgctgagcccct 88
