miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00835;mir-58;ABEG01002137.1/7752-7656 135651:Caenorhabditis
brenneri
Length = 97
Score = 113 bits (57), Expect = 5e-25
Identities = 79/85 (92%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 22 ccattgccctactattcgcatctcatcacttcctccagtaatataaggatgagatcgttt 81
||||||||||||| |||||||||||||||||| ||| |||||||||||||||||| ||
Sbjct: 12 ccattgccctactcttcgcatctcatcacttcgtccgccaatataaggatgagatcg-tt 70
Query: 82 cagtacggcaatggaaagagctata 106
|||||||||||||||||||||||||
Sbjct: 71 cagtacggcaatggaaagagctata 95
>RF00835;mir-58;AC024848.1/16188-16284 6239:Caenorhabditis elegans
Length = 97
Score = 85.7 bits (43), Expect = 1e-16
Identities = 68/75 (90%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 22 ccattgccctactattcgcatctcatcacttcctccagtaatataaggatgagatcgttt 81
||||||||||||| |||||||||||||||||| |||| || ||| ||||||||||| ||
Sbjct: 12 ccattgccctactcttcgcatctcatcacttcgtccaataccatagggatgagatcg-tt 70
Query: 82 cagtacggcaatgga 96
|||||||||||||||
Sbjct: 71 cagtacggcaatgga 85
>RF00835;mir-58;CAAC02000451.1/314460-314357 6238:Caenorhabditis
briggsae
Length = 104
Score = 69.9 bits (35), Expect = 7e-12
Identities = 42/43 (97%), Gaps = 1/43 (2%)
Strand = Plus / Plus
Query: 62 atataaggatgagatcgtttcagtacggcaatggaaagagcta 104
||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 59 atataaggatgagatcgtt-cagtacggcaatggaaagagcta 100
>RF00835;mir-58;ABLE02019268.1/186-280 281687:Caenorhabditis
japonica
Length = 95
Score = 44.1 bits (22), Expect = 4e-04
Identities = 32/34 (94%), Gaps = 1/34 (2%)
Strand = Plus / Plus
Query: 69 gatgagatcgtttcagtacggcaatggaaagagc 102
|||||||||||| ||||||||||||||| |||||
Sbjct: 57 gatgagatcgtt-cagtacggcaatggagagagc 89
