miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00811;mir-84;AAGD02011097.1/57200-57312 31234:Caenorhabditis
           remanei
          Length = 113

 Score =  198 bits (100), Expect = 1e-50
 Identities = 100/100 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacgaaacagtctaacagaagcatctgaggtagtttgtaatgctgtcgacgcactgtaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14  tacgaaacagtctaacagaagcatctgaggtagtttgtaatgctgtcgacgcactgtaat 73

                                                   
Query: 61  gtctacatcatttcaactgcctcggctgtttttagacttt 100
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 74  gtctacatcatttcaactgcctcggctgtttttagacttt 113




>RF00811;mir-84;ABEG01001616.1/19898-19785 135651:Caenorhabditis
           brenneri
          Length = 114

 Score = 69.9 bits (35), Expect = 6e-12
 Identities = 63/71 (88%), Gaps = 1/71 (1%)
 Strand = Plus / Plus

                                                                       
Query: 22  catctgaggtagtttgtaa-tgctgtcgacgcactgtaatgtctacatcatttcaactgc 80
           |||||||||||||||| || ||||||||||||| ||| ||||| ||| ||||||||||  
Sbjct: 35  catctgaggtagtttggaaatgctgtcgacgcattgtgatgtcaacaacatttcaactaa 94

                      
Query: 81  ctcggctgttt 91
           |||||||||||
Sbjct: 95  ctcggctgttt 105




>RF00811;mir-84;CAAC02000532.1/88618-88505 6238:Caenorhabditis
           briggsae
          Length = 114

 Score = 67.9 bits (34), Expect = 3e-11
 Identities = 62/70 (88%), Gaps = 1/70 (1%)
 Strand = Plus / Plus

                                                                       
Query: 22  catctgaggtagtttgtaatgctgtcgacg-cactgtaatgtctacatcatttcaactgc 80
           |||||||||||||||| |||||||||||||  |||| || ||| |||||||| ||||| |
Sbjct: 35  catctgaggtagtttgcaatgctgtcgacgtaactgaaaagtcaacatcattccaacttc 94

                     
Query: 81  ctcggctgtt 90
           ||||||||||
Sbjct: 95  ctcggctgtt 104