miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00811;mir-84;AAGD02011097.1/57200-57312 31234:Caenorhabditis
remanei
Length = 113
Score = 198 bits (100), Expect = 1e-50
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 1 tacgaaacagtctaacagaagcatctgaggtagtttgtaatgctgtcgacgcactgtaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 tacgaaacagtctaacagaagcatctgaggtagtttgtaatgctgtcgacgcactgtaat 73
Query: 61 gtctacatcatttcaactgcctcggctgtttttagacttt 100
||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 gtctacatcatttcaactgcctcggctgtttttagacttt 113
>RF00811;mir-84;ABEG01001616.1/19898-19785 135651:Caenorhabditis
brenneri
Length = 114
Score = 69.9 bits (35), Expect = 6e-12
Identities = 63/71 (88%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 22 catctgaggtagtttgtaa-tgctgtcgacgcactgtaatgtctacatcatttcaactgc 80
|||||||||||||||| || ||||||||||||| ||| ||||| ||| ||||||||||
Sbjct: 35 catctgaggtagtttggaaatgctgtcgacgcattgtgatgtcaacaacatttcaactaa 94
Query: 81 ctcggctgttt 91
|||||||||||
Sbjct: 95 ctcggctgttt 105
>RF00811;mir-84;CAAC02000532.1/88618-88505 6238:Caenorhabditis
briggsae
Length = 114
Score = 67.9 bits (34), Expect = 3e-11
Identities = 62/70 (88%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 22 catctgaggtagtttgtaatgctgtcgacg-cactgtaatgtctacatcatttcaactgc 80
|||||||||||||||| ||||||||||||| |||| || ||| |||||||| ||||| |
Sbjct: 35 catctgaggtagtttgcaatgctgtcgacgtaactgaaaagtcaacatcattccaacttc 94
Query: 81 ctcggctgtt 90
||||||||||
Sbjct: 95 ctcggctgtt 104
