miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00710;mir-44;ABKE01001765.1/17946-17852 54126:Pristionchus
pacificus
Length = 95
Score = 184 bits (93), Expect = 1e-46
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 4 tcgcagccccgctctggatgtgtgatcttggtcgtatccgcgcaaatgctcaatgattat 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcgcagccccgctctggatgtgtgatcttggtcgtatccgcgcaaatgctcaatgattat 60
Query: 64 gactagagacacattcagcttggggccggctct 96
|||||||||||||||||||||||||||||||||
Sbjct: 61 gactagagacacattcagcttggggccggctct 93
>RF00710;mir-44;Z70213.1/3656-3563 6239:Caenorhabditis elegans
Length = 94
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 61 tatgactagagacacattcagcttggggccg 91
|||||||||||||||||||||||||| ||||
Sbjct: 58 tatgactagagacacattcagcttggcgccg 88
>RF00710;mir-44;CAAC02000450.1/2301452-2301360 6238:Caenorhabditis
briggsae
Length = 93
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 60 ttatgactagagacacattcagcttgg 86
|||||||||||||||||||||||||||
Sbjct: 56 ttatgactagagacacattcagcttgg 82
>RF00710;mir-44;ABLE02021980.1/2278-2189 281687:Caenorhabditis
japonica
Length = 90
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 56 atgattatgactagagacacattcagcttgg 86
|||| ||||||||||||||||||||||||||
Sbjct: 49 atgagtatgactagagacacattcagcttgg 79
>RF00710;mir-44;ABEG01005634.1/1647-1738 135651:Caenorhabditis
brenneri
Length = 92
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 61 tatgactagagacacattcagcttgg 86
||||||||||||||||||||||||||
Sbjct: 56 tatgactagagacacattcagcttgg 81
>RF00710;mir-44;ABLE02021982.1/2149-2242 281687:Caenorhabditis
japonica
Length = 94
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 61 tatgactagagacacattcagcttgg 86
||||||||||||||||||||||||||
Sbjct: 58 tatgactagagacacattcagcttgg 83
>RF00710;mir-44;AAGD02000348.1/78845-78938 31234:Caenorhabditis
remanei
Length = 94
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 61 tatgactagagacacattcagcttgg 86
||||||||||||||||||||||||||
Sbjct: 58 tatgactagagacacattcagcttgg 83
>RF00710;mir-44;Z70213.1/12643-12735 6239:Caenorhabditis elegans
Length = 93
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 61 tatgactagagacacattcagcttgg 86
||||||||||||||||||||||||||
Sbjct: 57 tatgactagagacacattcagcttgg 82
