miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01915;mir-2238;ABKE01006091.1/3873-3753 54126:Pristionchus
pacificus
Length = 121
Score = 234 bits (118), Expect = 2e-61
Identities = 118/118 (100%)
Strand = Plus / Plus
Query: 1 cggtttatggtaactagtcattcctctttcccttttcactcatctcgtcaatcgataatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 cggtttatggtaactagtcattcctctttcccttttcactcatctcgtcaatcgataatt 63
Query: 61 gaatttcgaatgacagatcagtgcgcgagaaggaagactagcttccgtaatacactgg 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 gaatttcgaatgacagatcagtgcgcgagaaggaagactagcttccgtaatacactgg 121
>RF01915;mir-2238;ABKE01012537.1/90-209 54126:Pristionchus pacificus
Length = 120
Score = 137 bits (69), Expect = 4e-32
Identities = 97/105 (92%), Gaps = 1/105 (0%)
Strand = Plus / Plus
Query: 8 tggtaactagtcattcctctttcccttttcactcatctcgtcaatcgataattgaatttc 67
|||||||||||| ||||||||||| || |||||| ||||||| ||||| ||||||||||
Sbjct: 11 tggtaactagtcgatcctctttcccgtt-cactcaactcgtcagtcgattattgaatttc 69
Query: 68 gaatgacagatcagtgcgcgagaaggaagactagcttccgtaata 112
||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 70 gaatgacagttcagtgcgcgagaaggaagactagcttccgtaata 114
>RF01915;mir-2238;ABKE01000098.1/36649-36530 54126:Pristionchus
pacificus
Length = 120
Score = 129 bits (65), Expect = 9e-30
Identities = 93/101 (92%), Gaps = 1/101 (0%)
Strand = Plus / Plus
Query: 8 tggtaactagtcattcctctttcccttttcactcatctcgtcaatcgataattgaatttc 67
|||||||||||| ||||||||||| || ||||| |||||||| ||||| ||||||| ||
Sbjct: 11 tggtaactagtcgatcctctttcccgtt-cactcttctcgtcagtcgatgattgaatatc 69
Query: 68 gaatgacagatcagtgcgcgagaaggaagactagcttccgt 108
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 gaatgacagatcagtgcgcgagaaggaagactagcttccgt 110
>RF01915;mir-2238;ABKE01006091.1/4715-4593 54126:Pristionchus
pacificus
Length = 123
Score = 125 bits (63), Expect = 1e-28
Identities = 99/109 (90%), Gaps = 4/109 (3%)
Strand = Plus / Plus
Query: 1 cggtttatggtaactagtcattcctctttcccttttcactcatctcgtcaatcgataatt 60
|||||| |||||||||||| ||||||||||| || |||||||||||||||||||| |||
Sbjct: 4 cggtttctggtaactagtcgatcctctttcccgtt-cactcatctcgtcaatcgatgatt 62
Query: 61 gaatttcgaatgacag---atcagtgcgcgagaaggaagactagcttcc 106
||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 63 gaatttcgagtgacagatcatcagtgcgcgagaaggaagactagcttcc 111
>RF01915;mir-2238;ABKE01003178.1/10932-11051 54126:Pristionchus
pacificus
Length = 120
Score = 99.6 bits (50), Expect = 8e-21
Identities = 68/74 (91%)
Strand = Plus / Plus
Query: 35 ttcactcatctcgtcaatcgataattgaatttcgaatgacagatcagtgcgcgagaagga 94
||||||| |||||||| ||||| |||||| |||||||||| || ||||||||||||||||
Sbjct: 37 ttcactcttctcgtcagtcgatgattgaaattcgaatgactgaacagtgcgcgagaagga 96
Query: 95 agactagcttccgt 108
||||||||||||||
Sbjct: 97 agactagcttccgt 110
>RF01915;mir-2238;ABKE01003698.1/3164-3283 54126:Pristionchus
pacificus
Length = 120
Score = 97.6 bits (49), Expect = 3e-20
Identities = 89/101 (88%), Gaps = 1/101 (0%)
Strand = Plus / Plus
Query: 8 tggtaactagtcattcctctttcccttttcactcatctcgtcaatcgataattgaatttc 67
||||| |||||| || ||||||||| || ||||| |||||||| ||||| || |||| |
Sbjct: 11 tggtacctagtcttttctctttcccgtt-cactcttctcgtcagtcgatgatcgaatata 69
Query: 68 gaatgacagatcagtgcgcgagaaggaagactagcttccgt 108
|||||||||| ||||||||||||||||||||||||||||||
Sbjct: 70 gaatgacagaacagtgcgcgagaaggaagactagcttccgt 110
>RF01915;mir-2238;ABKE01000956.1/23514-23395 54126:Pristionchus
pacificus
Length = 120
Score = 91.7 bits (46), Expect = 2e-18
Identities = 94/106 (88%), Gaps = 3/106 (2%)
Strand = Plus / Plus
Query: 4 tttatggtaactagtcattcctctttcccttttcactcatctcgtcaatcgataattgaa 63
|||||| || |||||| ||||||||||| || ||||| |||||||| ||||| || |||
Sbjct: 7 tttatgatacctagtcgatcctctttcccgtt-cactcttctcgtcagtcgatgat-gaa 64
Query: 64 tttcgaatgacagatca-gtgcgcgagaaggaagactagcttccgt 108
|||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 65 tttcgaatgacagaacaagtgcgcgagaaggaagactagcttccgt 110
>RF01915;mir-2238;ABKE01006850.1/4143-4264 54126:Pristionchus
pacificus
Length = 122
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 89 gaaggaagactagcttccgtaa 110
||||||||||||||||||||||
Sbjct: 93 gaaggaagactagcttccgtaa 114
