miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01915;mir-2238;ABKE01000098.1/36649-36530 54126:Pristionchus
pacificus
Length = 120
Score = 194 bits (98), Expect = 2e-49
Identities = 104/106 (98%)
Strand = Plus / Plus
Query: 4 ttctggtatctagtcgatcctctttcccattcactcttctcgtcagtcgatgattgaata 63
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 8 ttctggtaactagtcgatcctctttcccgttcactcttctcgtcagtcgatgattgaata 67
Query: 64 tcgaatgacagatcagtgcgcgagaaggaagactagcttccgtgat 109
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 tcgaatgacagatcagtgcgcgagaaggaagactagcttccgtgat 113
>RF01915;mir-2238;ABKE01012537.1/90-209 54126:Pristionchus pacificus
Length = 120
Score = 155 bits (78), Expect = 1e-37
Identities = 99/106 (93%)
Strand = Plus / Plus
Query: 1 ttattctggtatctagtcgatcctctttcccattcactcttctcgtcagtcgatgattga 60
||||||||||| ||||||||||||||||||| ||||||| ||||||||||||| |||||
Sbjct: 5 ttattctggtaactagtcgatcctctttcccgttcactcaactcgtcagtcgattattga 64
Query: 61 atatcgaatgacagatcagtgcgcgagaaggaagactagcttccgt 106
|| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 65 atttcgaatgacagttcagtgcgcgagaaggaagactagcttccgt 110
>RF01915;mir-2238;ABKE01003698.1/3164-3283 54126:Pristionchus
pacificus
Length = 120
Score = 143 bits (72), Expect = 5e-34
Identities = 96/104 (92%)
Strand = Plus / Plus
Query: 4 ttctggtatctagtcgatcctctttcccattcactcttctcgtcagtcgatgattgaata 63
|||||||| |||||| | ||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 8 ttctggtacctagtcttttctctttcccgttcactcttctcgtcagtcgatgatcgaata 67
Query: 64 tcgaatgacagatcagtgcgcgagaaggaagactagcttccgtg 107
| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 68 tagaatgacagaacagtgcgcgagaaggaagactagcttccgtg 111
>RF01915;mir-2238;ABKE01003178.1/10932-11051 54126:Pristionchus
pacificus
Length = 120
Score = 139 bits (70), Expect = 9e-33
Identities = 97/106 (91%)
Strand = Plus / Plus
Query: 4 ttctggtatctagtcgatcctctttcccattcactcttctcgtcagtcgatgattgaata 63
||||||||||||||| | ||||| ||| |||||||||||||||||||||||||||||
Sbjct: 8 ttctggtatctagtcttttctcttccccgttcactcttctcgtcagtcgatgattgaaat 67
Query: 64 tcgaatgacagatcagtgcgcgagaaggaagactagcttccgtgat 109
||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 68 tcgaatgactgaacagtgcgcgagaaggaagactagcttccgtgat 113
>RF01915;mir-2238;ABKE01000956.1/23514-23395 54126:Pristionchus
pacificus
Length = 120
Score = 139 bits (70), Expect = 9e-33
Identities = 93/98 (94%), Gaps = 2/98 (2%)
Strand = Plus / Plus
Query: 13 ctagtcgatcctctttcccattcactcttctcgtcagtcgatgattgaatatcgaatgac 72
||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||
Sbjct: 17 ctagtcgatcctctttcccgttcactcttctcgtcagtcgatga-tgaatttcgaatgac 75
Query: 73 agatc-agtgcgcgagaaggaagactagcttccgtgat 109
||| | ||||||||||||||||||||||||||||||||
Sbjct: 76 agaacaagtgcgcgagaaggaagactagcttccgtgat 113
>RF01915;mir-2238;ABKE01006091.1/4715-4593 54126:Pristionchus
pacificus
Length = 123
Score = 131 bits (66), Expect = 2e-30
Identities = 95/104 (91%), Gaps = 3/104 (2%)
Strand = Plus / Plus
Query: 4 ttctggtatctagtcgatcctctttcccattcactcttctcgtcagtcgatgattgaata 63
|||||||| ||||||||||||||||||| ||||||| |||||||| |||||||||||||
Sbjct: 8 ttctggtaactagtcgatcctctttcccgttcactcatctcgtcaatcgatgattgaatt 67
Query: 64 tcgaatgacag---atcagtgcgcgagaaggaagactagcttcc 104
|||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 68 tcgagtgacagatcatcagtgcgcgagaaggaagactagcttcc 111
>RF01915;mir-2238;ABKE01006091.1/3873-3753 54126:Pristionchus
pacificus
Length = 121
Score = 121 bits (61), Expect = 2e-27
Identities = 92/101 (91%), Gaps = 1/101 (0%)
Strand = Plus / Plus
Query: 7 tggtatctagtcgatcctctttcccatt-cactcttctcgtcagtcgatgattgaatatc 65
||||| |||||| ||||||||||| || ||||| |||||||| ||||| ||||||| ||
Sbjct: 11 tggtaactagtcattcctctttcccttttcactcatctcgtcaatcgataattgaatttc 70
Query: 66 gaatgacagatcagtgcgcgagaaggaagactagcttccgt 106
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 gaatgacagatcagtgcgcgagaaggaagactagcttccgt 111
