miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01915;mir-2238;ABKE01003698.1/3164-3283 54126:Pristionchus
pacificus
Length = 120
Score = 192 bits (97), Expect = 6e-49
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 1 ggtacctagtcttttctctttcccgttcactcttctcgtcagtcgatgatcgaatataga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 ggtacctagtcttttctctttcccgttcactcttctcgtcagtcgatgatcgaatataga 71
Query: 61 atgacagaacagtgcgcgagaaggaagactagcttcc 97
|||||||||||||||||||||||||||||||||||||
Sbjct: 72 atgacagaacagtgcgcgagaaggaagactagcttcc 108
>RF01915;mir-2238;ABKE01000098.1/36649-36530 54126:Pristionchus
pacificus
Length = 120
Score = 139 bits (70), Expect = 7e-33
Identities = 79/82 (96%)
Strand = Plus / Plus
Query: 16 ctctttcccgttcactcttctcgtcagtcgatgatcgaatatagaatgacagaacagtgc 75
||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||
Sbjct: 27 ctctttcccgttcactcttctcgtcagtcgatgattgaatatcgaatgacagatcagtgc 86
Query: 76 gcgagaaggaagactagcttcc 97
||||||||||||||||||||||
Sbjct: 87 gcgagaaggaagactagcttcc 108
>RF01915;mir-2238;ABKE01003178.1/10932-11051 54126:Pristionchus
pacificus
Length = 120
Score = 137 bits (69), Expect = 3e-32
Identities = 90/97 (92%)
Strand = Plus / Plus
Query: 1 ggtacctagtcttttctctttcccgttcactcttctcgtcagtcgatgatcgaatataga 60
|||| ||||||||||||||| ||||||||||||||||||||||||||||| ||| | ||
Sbjct: 12 ggtatctagtcttttctcttccccgttcactcttctcgtcagtcgatgattgaaattcga 71
Query: 61 atgacagaacagtgcgcgagaaggaagactagcttcc 97
||||| |||||||||||||||||||||||||||||||
Sbjct: 72 atgactgaacagtgcgcgagaaggaagactagcttcc 108
>RF01915;mir-2238;ABKE01000956.1/23514-23395 54126:Pristionchus
pacificus
Length = 120
Score = 119 bits (60), Expect = 7e-27
Identities = 89/96 (92%), Gaps = 2/96 (2%)
Strand = Plus / Plus
Query: 3 tacctagtcttttctctttcccgttcactcttctcgtcagtcgatgatcgaatatagaat 62
||||||||| | ||||||||||||||||||||||||||||||||||| |||| | ||||
Sbjct: 14 tacctagtcgatcctctttcccgttcactcttctcgtcagtcgatgat-gaatttcgaat 72
Query: 63 gacagaac-agtgcgcgagaaggaagactagcttcc 97
|||||||| |||||||||||||||||||||||||||
Sbjct: 73 gacagaacaagtgcgcgagaaggaagactagcttcc 108
>RF01915;mir-2238;ABKE01012537.1/90-209 54126:Pristionchus pacificus
Length = 120
Score = 99.6 bits (50), Expect = 6e-21
Identities = 74/82 (90%)
Strand = Plus / Plus
Query: 16 ctctttcccgttcactcttctcgtcagtcgatgatcgaatatagaatgacagaacagtgc 75
||||||||||||||||| ||||||||||||| || |||| | ||||||||| ||||||
Sbjct: 27 ctctttcccgttcactcaactcgtcagtcgattattgaatttcgaatgacagttcagtgc 86
Query: 76 gcgagaaggaagactagcttcc 97
||||||||||||||||||||||
Sbjct: 87 gcgagaaggaagactagcttcc 108
>RF01915;mir-2238;ABKE01006091.1/3873-3753 54126:Pristionchus
pacificus
Length = 121
Score = 91.7 bits (46), Expect = 2e-18
Identities = 86/98 (87%), Gaps = 1/98 (1%)
Strand = Plus / Plus
Query: 1 ggtacctagtcttttctctttcccgtt-cactcttctcgtcagtcgatgatcgaatatag 59
|||| |||||| || ||||||||| || ||||| |||||||| ||||| || |||| | |
Sbjct: 12 ggtaactagtcattcctctttcccttttcactcatctcgtcaatcgataattgaatttcg 71
Query: 60 aatgacagaacagtgcgcgagaaggaagactagcttcc 97
||||||||| ||||||||||||||||||||||||||||
Sbjct: 72 aatgacagatcagtgcgcgagaaggaagactagcttcc 109
>RF01915;mir-2238;ABKE01006091.1/4715-4593 54126:Pristionchus
pacificus
Length = 123
Score = 85.7 bits (43), Expect = 1e-16
Identities = 75/85 (88%), Gaps = 3/85 (3%)
Strand = Plus / Plus
Query: 16 ctctttcccgttcactcttctcgtcagtcgatgatcgaatatagaatgacag---aacag 72
||||||||||||||||| |||||||| |||||||| |||| | || |||||| | |||
Sbjct: 27 ctctttcccgttcactcatctcgtcaatcgatgattgaatttcgagtgacagatcatcag 86
Query: 73 tgcgcgagaaggaagactagcttcc 97
|||||||||||||||||||||||||
Sbjct: 87 tgcgcgagaaggaagactagcttcc 111
