miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>38671_ppc-mir-2240a-2:mirbase
Length = 97
Score = 184 bits (93), Expect = 8e-48
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 1 gctactcgcaacgtcccttatcttctgaaatccaggtttcgatcactaattggtgtgatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gctactcgcaacgtcccttatcttctgaaatccaggtttcgatcactaattggtgtgatc 60
Query: 61 accgggattctcagtggattagggcatcgagtc 93
|||||||||||||||||||||||||||||||||
Sbjct: 61 accgggattctcagtggattagggcatcgagtc 93
>38673_ppc-mir-2240c:mirbase
Length = 115
Score = 139 bits (70), Expect = 4e-34
Identities = 88/94 (93%)
Strand = Plus / Plus
Query: 4 actcgcaacgtcccttatcttctgaaatccaggtttcgatcactaattggtgtgatcacc 63
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct: 14 actcgctacgtcccttatcttctgaaatctctgtttcgatcactaattggtgtgatccca 73
Query: 64 gggattctcagtggattagggcatcgagtcagct 97
||||||||||||||||||||||||||||||||||
Sbjct: 74 gggattctcagtggattagggcatcgagtcagct 107
>38672_ppc-mir-2240b:mirbase
Length = 90
Score = 123 bits (62), Expect = 2e-29
Identities = 83/90 (92%)
Strand = Plus / Plus
Query: 3 tactcgcaacgtcccttatcttctgaaatccaggtttcgatcactaattggtgtgatcac 62
|||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
Sbjct: 1 tactcgcaacgtcccttatcttctgaaatctctgtttcgatcactaattggagtgatccc 60
Query: 63 cgggattctcagtggattagggcatcgagt 92
|||||||||||| ||||||||||||||||
Sbjct: 61 agggattctcagtagattagggcatcgagt 90
>38693_ppc-mir-2251:mirbase
Length = 100
Score = 46.1 bits (23), Expect = 5e-06
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 29 aatccaggtttcgatcactaattggtgtgatcaccgggattct 71
||||| ||||| |||||||| ||| |||||||||||||||||
Sbjct: 33 aatcccggttttgatcactagttgcagtgatcaccgggattct 75
