miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01899;mir-2241;ABKE01007499.1/2558-2462 54126:Pristionchus
pacificus
Length = 97
Score = 174 bits (88), Expect = 1e-43
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 1 attcgatacgcctctgatcttcaggatccctgtctgaacaccgaaattgagtgttcgcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 attcgatacgcctctgatcttcaggatccctgtctgaacaccgaaattgagtgttcgcaa 65
Query: 61 ggattcctcaagatcagggcctcgaatc 88
||||||||||||||||||||||||||||
Sbjct: 66 ggattcctcaagatcagggcctcgaatc 93
>RF01899;mir-2241;ABKE01000303.1/39982-40078 54126:Pristionchus
pacificus
Length = 97
Score = 125 bits (63), Expect = 1e-28
Identities = 69/71 (97%)
Strand = Plus / Plus
Query: 15 tgatcttcaggatccctgtctgaacaccgaaattgagtgttcgcaaggattcctcaagat 74
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 20 tgatcttcaggatccctgtctgaacacagaaattgagtgttcgcaaggattcctcaagat 79
Query: 75 cagggcctcga 85
|||||| ||||
Sbjct: 80 cagggcttcga 90
>RF01899;mir-2241;ABKE01007499.1/2426-2332 54126:Pristionchus
pacificus
Length = 95
Score = 61.9 bits (31), Expect = 1e-09
Identities = 67/78 (85%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 1 attcgatacgcctctgatcttcaggatccctgtctgaacaccgaaattgagtgttcgcaa 60
|||||||||||| || |||| |||||||| ||||||| | |||||||| |||| ||||
Sbjct: 6 attcgatacgcccctaatctacaggatccttgtctga--aacgaaattgtgtgtatgcaa 63
Query: 61 ggattcctcaagatcagg 78
||||||||||| ||||||
Sbjct: 64 ggattcctcaaaatcagg 81
