miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>38678_ppc-mir-2241a-5:mirbase
Length = 88
Score = 174 bits (88), Expect = 7e-45
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 1 attcgatacgcctctgatcttcaggatccctgtctgaacatcgaaattgagtgttcgcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 attcgatacgcctctgatcttcaggatccctgtctgaacatcgaaattgagtgttcgcaa 60
Query: 61 ggattcctcaagatcagggcctcgaatc 88
||||||||||||||||||||||||||||
Sbjct: 61 ggattcctcaagatcagggcctcgaatc 88
>38674_ppc-mir-2241a-1:mirbase
Length = 88
Score = 167 bits (84), Expect = 2e-42
Identities = 87/88 (98%)
Strand = Plus / Plus
Query: 1 attcgatacgcctctgatcttcaggatccctgtctgaacatcgaaattgagtgttcgcaa 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 attcgatacgcctctgatcttcaggatccctgtctgaacaccgaaattgagtgttcgcaa 60
Query: 61 ggattcctcaagatcagggcctcgaatc 88
||||||||||||||||||||||||||||
Sbjct: 61 ggattcctcaagatcagggcctcgaatc 88
>38680_ppc-mir-2241b-2:mirbase
Length = 97
Score = 137 bits (69), Expect = 1e-33
Identities = 81/85 (95%)
Strand = Plus / Plus
Query: 1 attcgatacgcctctgatcttcaggatccctgtctgaacatcgaaattgagtgttcgcaa 60
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 6 attcgatacgcctctgatcttcaggatccctgtctgaacacagaaattgagtgttcgcaa 65
Query: 61 ggattcctcaagatcagggcctcga 85
|| ||||||||||||||||| ||||
Sbjct: 66 ggtttcctcaagatcagggcttcga 90
>38679_ppc-mir-2241b-1:mirbase
Length = 97
Score = 137 bits (69), Expect = 1e-33
Identities = 81/85 (95%)
Strand = Plus / Plus
Query: 1 attcgatacgcctctgatcttcaggatccctgtctgaacatcgaaattgagtgttcgcaa 60
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 6 attcgatacgcctctgatcttcaggatccctgtctgaacacagaaattgagtgttcgcaa 65
Query: 61 ggattcctcaagatcagggcctcga 85
|| ||||||||||||||||| ||||
Sbjct: 66 ggtttcctcaagatcagggcttcga 90
>38681_ppc-mir-2241b-3:mirbase
Length = 97
Score = 135 bits (68), Expect = 6e-33
Identities = 80/84 (95%)
Strand = Plus / Plus
Query: 2 ttcgatacgcctctgatcttcaggatccctgtctgaacatcgaaattgagtgttcgcaag 61
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 7 ttcgatacgcctctgatcttcaggatccctgtctgaacacagaaattgagtgttcgcaag 66
Query: 62 gattcctcaagatcagggcctcga 85
| ||||||||||||||||| ||||
Sbjct: 67 gtttcctcaagatcagggcttcga 90
>38682_ppc-mir-2241c:mirbase
Length = 97
Score = 129 bits (65), Expect = 4e-31
Identities = 80/85 (94%)
Strand = Plus / Plus
Query: 1 attcgatacgcctctgatcttcaggatccctgtctgaacatcgaaattgagtgttcgcaa 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 6 attcgatacgcctctgatcttcaggatccctgtctgaacacagaaattgagtgttcacaa 65
Query: 61 ggattcctcaagatcagggcctcga 85
|| ||||||||||||||||| ||||
Sbjct: 66 ggtttcctcaagatcagggcttcga 90
>38677_ppc-mir-2241a-4:mirbase
Length = 97
Score = 117 bits (59), Expect = 1e-27
Identities = 68/71 (95%)
Strand = Plus / Plus
Query: 15 tgatcttcaggatccctgtctgaacatcgaaattgagtgttcgcaaggattcctcaagat 74
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 20 tgatcttcaggatccctgtctgaacacagaaattgagtgttcgcaaggattcctcaagat 79
Query: 75 cagggcctcga 85
|||||| ||||
Sbjct: 80 cagggcttcga 90
>38676_ppc-mir-2241a-3:mirbase
Length = 118
Score = 117 bits (59), Expect = 1e-27
Identities = 68/71 (95%)
Strand = Plus / Plus
Query: 15 tgatcttcaggatccctgtctgaacatcgaaattgagtgttcgcaaggattcctcaagat 74
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 28 tgatcttcaggatccctgtctgaacacagaaattgagtgttcgcaaggattcctcaagat 87
Query: 75 cagggcctcga 85
|||||| ||||
Sbjct: 88 cagggcttcga 98
