miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>39306_cre-MIR908:mirbase
Length = 230
Score = 456 bits (230), Expect = e-129
Identities = 230/230 (100%)
Strand = Plus / Plus
Query: 1 gtgggttttgagaagatgcggtccgttggctataatgttgacagaccacccgctccctta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgggttttgagaagatgcggtccgttggctataatgttgacagaccacccgctccctta 60
Query: 61 ctgacgcagttgacgcgtttgatagcaggatcatagtacgggaccagttcccctaccaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctgacgcagttgacgcgtttgatagcaggatcatagtacgggaccagttcccctaccaac 120
Query: 121 tggtcccgtaaccactatgatcctgctatcaaaggcgtcaactacgtcaataaggcagcg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tggtcccgtaaccactatgatcctgctatcaaaggcgtcaactacgtcaataaggcagcg 180
Query: 181 ggtggtcaatatacattattgccaacggaccggttctcctcaaatgtcac 230
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggtggtcaatatacattattgccaacggaccggttctcctcaaatgtcac 230
Score = 119 bits (60), Expect = 1e-27
Identities = 164/198 (82%), Gaps = 8/198 (4%)
Strand = Plus / Minus
Query: 19 cggtccgttggctataatgttgacagaccacccgctcccttactgacgcagttgacgcgt 78
|||||||||||| ||||||| | ||||||||||| ||||| ||||| ||||||||| |
Sbjct: 212 cggtccgttggcaataatgtatattgaccacccgctgccttattgacgtagttgacgcct 153
Query: 79 ttgatagcaggatcatagt----acgggaccagttcccctaccaactggtcccgtaacca 134
||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 152 ttgatagcaggatcatagtggttacgggaccagttggtaggggaactggtcccgta---- 97
Query: 135 ctatgatcctgctatcaaaggcgtcaactacgtcaataaggcagcgggtggtcaatatac 194
||||||||||||||||||| ||||||||| ||||| ||||| ||||||||||| | ||
Sbjct: 96 ctatgatcctgctatcaaacgcgtcaactgcgtcagtaagggagcgggtggtctgtcaac 37
Query: 195 attattgccaacggaccg 212
||||| ||||||||||||
Sbjct: 36 attatagccaacggaccg 19
>39305_cre-MIR908:mirbase
Length = 230
Score = 456 bits (230), Expect = e-129
Identities = 230/230 (100%)
Strand = Plus / Plus
Query: 1 gtgggttttgagaagatgcggtccgttggctataatgttgacagaccacccgctccctta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgggttttgagaagatgcggtccgttggctataatgttgacagaccacccgctccctta 60
Query: 61 ctgacgcagttgacgcgtttgatagcaggatcatagtacgggaccagttcccctaccaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctgacgcagttgacgcgtttgatagcaggatcatagtacgggaccagttcccctaccaac 120
Query: 121 tggtcccgtaaccactatgatcctgctatcaaaggcgtcaactacgtcaataaggcagcg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tggtcccgtaaccactatgatcctgctatcaaaggcgtcaactacgtcaataaggcagcg 180
Query: 181 ggtggtcaatatacattattgccaacggaccggttctcctcaaatgtcac 230
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggtggtcaatatacattattgccaacggaccggttctcctcaaatgtcac 230
Score = 119 bits (60), Expect = 1e-27
Identities = 164/198 (82%), Gaps = 8/198 (4%)
Strand = Plus / Minus
Query: 19 cggtccgttggctataatgttgacagaccacccgctcccttactgacgcagttgacgcgt 78
|||||||||||| ||||||| | ||||||||||| ||||| ||||| ||||||||| |
Sbjct: 212 cggtccgttggcaataatgtatattgaccacccgctgccttattgacgtagttgacgcct 153
Query: 79 ttgatagcaggatcatagt----acgggaccagttcccctaccaactggtcccgtaacca 134
||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 152 ttgatagcaggatcatagtggttacgggaccagttggtaggggaactggtcccgta---- 97
Query: 135 ctatgatcctgctatcaaaggcgtcaactacgtcaataaggcagcgggtggtcaatatac 194
||||||||||||||||||| ||||||||| ||||| ||||| ||||||||||| | ||
Sbjct: 96 ctatgatcctgctatcaaacgcgtcaactgcgtcagtaagggagcgggtggtctgtcaac 37
Query: 195 attattgccaacggaccg 212
||||| ||||||||||||
Sbjct: 36 attatagccaacggaccg 19
