miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;AM485267.2/15969-16057 29760:Vitis vinifera
Length = 89
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 gtcggaccaggcttcattcctctc 77
||||||||||||||||||||||||
Sbjct: 63 gtcggaccaggcttcattcctctc 86
>RF00075;mir-166;ABIM01020443.1/6232-6097 3649:Carica papaya
(papaya)
Length = 136
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 gtcgtcggaccaggcttcattcc 73
|||||||||||||||||||||||
Sbjct: 107 gtcgtcggaccaggcttcattcc 129
>RF00075;mir-166;EU548853.1/145-266 3702:Arabidopsis thaliana (thale
cress)
Length = 122
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 gtcgtcggaccaggcttcattcc 73
|||||||||||||||||||||||
Sbjct: 93 gtcgtcggaccaggcttcattcc 115
>RF00075;mir-166;AARH01001165.1/83261-83385 3694:Populus trichocarpa
Length = 125
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 gtcgtcggaccaggcttcattcc 73
|||||||||||||||||||||||
Sbjct: 96 gtcgtcggaccaggcttcattcc 118
>RF00075;mir-166;AASG02010073.1/7999-8131 3988:Ricinus communis
(castor bean)
Length = 133
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 gtcgtcggaccaggcttcattcc 73
|||||||||||||||||||||||
Sbjct: 104 gtcgtcggaccaggcttcattcc 126
>RF00075;mir-166;AM468140.2/16750-16595 29760:Vitis vinifera
Length = 156
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 gtcgtcggaccaggcttcattcc 73
|||||||||||||||||||||||
Sbjct: 127 gtcgtcggaccaggcttcattcc 149
>RF00075;mir-166;CAAP02000145.1/77043-77192 29760:Vitis vinifera
Length = 150
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 gtcgtcggaccaggcttcattcc 73
|||||||||||||||||||||||
Sbjct: 121 gtcgtcggaccaggcttcattcc 143
>RF00075;mir-166;FJ010939.2/353-450 52838:Musa balbisiana
Length = 98
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 55 tcggaccaggcttcattcctctc 77
|||||||||||||||||||||||
Sbjct: 73 tcggaccaggcttcattcctctc 95
>RF00075;mir-166;ABXC01002961.1/62497-62388 4558:Sorghum bicolor
(sorghum)
Length = 110
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 cgtcggaccaggcttcattcctc 75
|||||||||||||||||||||||
Sbjct: 83 cgtcggaccaggcttcattcctc 105
>RF00075;mir-166;AP004125.3/115293-115185 39947:Oryza sativa
Japonica Group
Length = 109
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 cgtcggaccaggcttcattcctc 75
|||||||||||||||||||||||
Sbjct: 82 cgtcggaccaggcttcattcctc 104
>RF00075;mir-166;AP009261.1/72240-72093 4081:Solanum lycopersicum
Length = 148
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 11 gttgaggggaatgctatctggctcgaggtc 40
||||||||||||| | ||||||||||||||
Sbjct: 1 gttgaggggaatgttgtctggctcgaggtc 30
