miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51555_pta-miR159c:pmrd
Length = 85
Score = 168 bits (85), Expect = 4e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 1 gatgtgtgaatgatgcgggagctgattttgtccaggaaatgtcttttccttggattgaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatgtgtgaatgatgcgggagctgattttgtccaggaaatgtcttttccttggattgaag 60
Query: 61 ggagctcccttatgtagcatacatt 85
|||||||||||||||||||||||||
Sbjct: 61 ggagctcccttatgtagcatacatt 85
>54573_smo-miR159:pmrd
Length = 279
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 48 ccttggattgaagggagctccctt 71
||||||||||||||||||||||||
Sbjct: 248 ccttggattgaagggagctccctt 271
>51547_psi-miR159:pmrd
Length = 193
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 46 ttccttggattgaagggagctcc 68
|||||||||||||||||||||||
Sbjct: 170 ttccttggattgaagggagctcc 192
>55054_zma-miR319m:pmrd
Length = 178
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 49 cttggattgaagggagctcc 68
||||||||||||||||||||
Sbjct: 158 cttggattgaagggagctcc 177
>54936_zma-miR159g:pmrd
Length = 180
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 49 cttggattgaagggagctcc 68
||||||||||||||||||||
Sbjct: 159 cttggattgaagggagctcc 178
>54935_zma-miR159f:pmrd
Length = 181
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 49 cttggattgaagggagctcc 68
||||||||||||||||||||
Sbjct: 160 cttggattgaagggagctcc 179
>54933_zma-miR159d:pmrd
Length = 217
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 49 cttggattgaagggagctcc 68
||||||||||||||||||||
Sbjct: 178 cttggattgaagggagctcc 197
>54932_zma-miR159c:pmrd
Length = 217
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 49 cttggattgaagggagctcc 68
||||||||||||||||||||
Sbjct: 178 cttggattgaagggagctcc 197
>54846_vvi-miR319f:pmrd
Length = 193
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 atgtgtgaatgatgcgggag 21
||||||||||||||||||||
Sbjct: 114 atgtgtgaatgatgcgggag 133
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 49 cttggattgaagggagctccctt 71
|||||| ||||||||||||||||
Sbjct: 161 cttggactgaagggagctccctt 183
>54643_sof-miR319b:pmrd
Length = 176
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 49 cttggattgaagggagctcc 68
||||||||||||||||||||
Sbjct: 156 cttggattgaagggagctcc 175
>54630_sof-miR159c:pmrd
Length = 238
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 49 cttggattgaagggagctcc 68
||||||||||||||||||||
Sbjct: 199 cttggattgaagggagctcc 218
>54583_smo-miR319:pmrd
Length = 215
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 48 ccttggattgaagggagctccctt 71
||||||| ||||||||||||||||
Sbjct: 184 ccttggactgaagggagctccctt 207
>54403_sbi-miR159b:pmrd
Length = 253
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 49 cttggattgaagggagctcc 68
||||||||||||||||||||
Sbjct: 214 cttggattgaagggagctcc 233
>51709_ptc-miR319c:pmrd
Length = 196
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 atgtgtgaatgatgcgggag 21
||||||||||||||||||||
Sbjct: 120 atgtgtgaatgatgcgggag 139
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 49 cttggattgaagggagctccctt 71
|||||| ||||||||||||||||
Sbjct: 167 cttggactgaagggagctccctt 189
>51605_ptc-miR159d:pmrd
Length = 194
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 49 cttggattgaagggagctcc 68
||||||||||||||||||||
Sbjct: 165 cttggattgaagggagctcc 184
>51562_pta-miR319:pmrd
Length = 206
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 49 cttggattgaagggagctcc 68
||||||||||||||||||||
Sbjct: 27 cttggattgaagggagctcc 8
>51553_pta-miR159a:pmrd
Length = 210
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 49 cttggattgaagggagctcc 68
||||||||||||||||||||
Sbjct: 184 cttggattgaagggagctcc 203
>54844_vvi-miR319c:pmrd
Length = 182
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 49 cttggattgaagggagctccctt 71
|||||| ||||||||||||||||
Sbjct: 150 cttggactgaagggagctccctt 172
>54843_vvi-miR319b:pmrd
Length = 194
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 49 cttggattgaagggagctccctt 71
|||||| ||||||||||||||||
Sbjct: 162 cttggactgaagggagctccctt 184
>51713_ptc-miR319g:pmrd
Length = 204
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 3 tgtgtgaatgatgcgggag 21
|||||||||||||||||||
Sbjct: 128 tgtgtgaatgatgcgggag 146
>51712_ptc-miR319f:pmrd
Length = 202
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 3 tgtgtgaatgatgcgggag 21
|||||||||||||||||||
Sbjct: 126 tgtgtgaatgatgcgggag 144
>51710_ptc-miR319d:pmrd
Length = 193
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 49 cttggattgaagggagctccctt 71
|||||| ||||||||||||||||
Sbjct: 164 cttggactgaagggagctccctt 186
>51707_ptc-miR319a:pmrd
Length = 188
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 49 cttggattgaagggagctccctt 71
|||||| ||||||||||||||||
Sbjct: 159 cttggactgaagggagctccctt 181
>51351_ppl-miR319:pmrd
Length = 204
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 3 tgtgtgaatgatgcgggag 21
|||||||||||||||||||
Sbjct: 126 tgtgtgaatgatgcgggag 144
>48824_osa-miR159f:pmrd
Length = 188
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 49 cttggattgaagggagctc 67
|||||||||||||||||||
Sbjct: 158 cttggattgaagggagctc 176
>48823_osa-miR159e:pmrd
Length = 191
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 50 ttggattgaagggagctcc 68
|||||||||||||||||||
Sbjct: 162 ttggattgaagggagctcc 180
>48822_osa-miR159d:pmrd
Length = 189
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 50 ttggattgaagggagctcc 68
|||||||||||||||||||
Sbjct: 160 ttggattgaagggagctcc 178
>48821_osa-miR159c:pmrd
Length = 197
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 50 ttggattgaagggagctcc 68
|||||||||||||||||||
Sbjct: 168 ttggattgaagggagctcc 186
>48699_mtr-miR159a:pmrd
Length = 168
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 45 tttccttggattgaagggagctc 67
|||| ||||||||||||||||||
Sbjct: 144 tttctttggattgaagggagctc 166
>48573_gma-miR319b:pmrd
Length = 208
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 49 cttggattgaagggagctccctt 71
|||||| ||||||||||||||||
Sbjct: 169 cttggactgaagggagctccctt 191
>48572_gma-miR319a:pmrd
Length = 207
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 49 cttggattgaagggagctccctt 71
|||||| ||||||||||||||||
Sbjct: 168 cttggactgaagggagctccctt 190
>46994_ath-miR319c:pmrd
Length = 199
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 3 tgtgtgaatgatgcgggag 21
|||||||||||||||||||
Sbjct: 124 tgtgtgaatgatgcgggag 142
>46933_ath-miR159c:pmrd
Length = 225
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 50 ttggattgaagggagctcc 68
|||||||||||||||||||
Sbjct: 196 ttggattgaagggagctcc 214
