miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51581_pta-miR952a:pmrd
Length = 450
Score = 892 bits (450), Expect = 0.0
Identities = 450/450 (100%)
Strand = Plus / Plus
Query: 1 gaaccagtagcgtattgaacagagcatgccgttggttgagtaagtacgtcaagggacgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaaccagtagcgtattgaacagagcatgccgttggttgagtaagtacgtcaagggacgaa 60
Query: 61 acagaattaattttcattaacattttattaaccttcaactctgccttggcctagggcagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acagaattaattttcattaacattttattaaccttcaactctgccttggcctagggcagt 120
Query: 121 tcctgaaggtcacattgactggggcgtgatacaacgcgtagtccgctggttgctgcgacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcctgaaggtcacattgactggggcgtgatacaacgcgtagtccgctggttgctgcgacc 180
Query: 181 attgggactcccccagcctattctcagctgcaacattcgcaagttatttacagtgttgca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 attgggactcccccagcctattctcagctgcaacattcgcaagttatttacagtgttgca 240
Query: 241 gccgagaataaaatgggaagagtcaaaagcgtggcaacaaccagccaattacgctttgta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gccgagaataaaatgggaagagtcaaaagcgtggcaacaaccagccaattacgctttgta 300
Query: 301 tcagcgccccaactggtgtgagcttcgggaattgccatatgccaagccagatttgcatgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tcagcgccccaactggtgtgagcttcgggaattgccatatgccaagccagatttgcatgc 360
Query: 361 taataaaacattattcgaaattaattgcgttttgttggttgacagacttcctccaccaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 taataaaacattattcgaaattaattgcgttttgttggttgacagacttcctccaccaat 420
Query: 421 gacacgctcagttcaatttgctgatggttc 450
||||||||||||||||||||||||||||||
Sbjct: 421 gacacgctcagttcaatttgctgatggttc 450
>51582_pta-miR952b:pmrd
Length = 438
Score = 202 bits (102), Expect = 2e-52
Identities = 359/442 (81%), Gaps = 22/442 (4%)
Strand = Plus / Plus
Query: 14 attgaacagagcatgccgttggttgagtaagtacgtcaagggacgaaacagaattaattt 73
||||||| ||| ||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 14 attgaactgagaatgccattggtggagtaagtacgtcaagggacgaaacagaattaattt 73
Query: 74 tcattaacattttattaaccttcaactctgccttggcctagggcagttcctgaaggtcac 133
| ||||||||||||||||||||||||||| ||||||| || || ||||| ||||||||||
Sbjct: 74 tgattaacattttattaaccttcaactctaccttggcttatggaagttcgtgaaggtcac 133
Query: 134 attgactggggcgtgatacaacgcgtagtccgctggttgctgc----gaccattgggact 189
| ||| ||| | ||||| |||||||||||| | | |||||||||
Sbjct: 134 a------ggg--------caaggactagtctgctggttgctgccacagtcaattgggact 179
Query: 190 cccccagcctattctcagctgcaacattcgcaagttatttacagtgttgcagccgagaat 249
| |||| |||||||||||||| ||||| |||||||| || ||||||||||||||||
Sbjct: 180 ctcccaagttattctcagctgcagcattccgaagttatt--caatgttgcagccgagaat 237
Query: 250 aaaatgggaagagtcaaaagcgtggcaacaaccagccaattacgctttgtatcagcgccc 309
| ||||| | |||| | | || ||||| |||||| ||||| | |||||| || ||||
Sbjct: 238 attatggggacagtccattg-gtcacaacagccagccgattacaccttgtatgagtgccc 296
Query: 310 caactggtgtgagcttcgggaattgccatatgccaagccagatttgc-atgctaataaaa 368
||||||||||||| ||| ||| ||||| | ||||| |||| |||| | ||||||||||
Sbjct: 297 caactggtgtgagtttcatgaactgccagaagccaaaacagagttgcaacgctaataaaa 356
Query: 369 cattattcgaaattaattgcgttttgttggttgacagacttcctccaccaatgacacgct 428
|||||| | ||||||||| | ||||||||||||||| ||||| ||| | ||| ||||||
Sbjct: 357 cattatgcaaaattaattccattttgttggttgacatacttcatccgctaatagcacgct 416
Query: 429 cagttcaatttgctgatggttc 450
||||||||||||| |||||||
Sbjct: 417 tagttcaatttgctaatggttc 438
