miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51360_ppt-miR160b:pmrd
Length = 103
Score = 204 bits (103), Expect = 9e-54
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 1 atgctagatccgcctggctccctgtatgccaactgcgagccttgctaaatatttgtttgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgctagatccgcctggctccctgtatgccaactgcgagccttgctaaatatttgtttgc 60
Query: 61 cttgattcatagctggcgttcagggagtcaagcagaccttgcg 103
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cttgattcatagctggcgttcagggagtcaagcagaccttgcg 103
>51367_ppt-miR160i:pmrd
Length = 139
Score = 67.9 bits (34), Expect = 1e-12
Identities = 76/89 (85%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 7 gatccgcctggctccctgtatgccaactgcgagccttgctaaatatttgtttgccttgat 66
||||||||||||||||||||||||| |||||| | ||||||| || |||||| |||
Sbjct: 26 gatccgcctggctccctgtatgccacctgcgaagcatgctaaaggtt--tttgccaggat 83
Query: 67 tcatagctggcgttcagggagtcaagcag 95
| |||||||||||||||||||||||||
Sbjct: 84 ttgcagctggcgttcagggagtcaagcag 112
>51366_ppt-miR160h:pmrd
Length = 136
Score = 61.9 bits (31), Expect = 8e-11
Identities = 75/89 (84%), Gaps = 3/89 (3%)
Strand = Plus / Plus
Query: 7 gatccgcctggctccctgtatgccaactgcgagccttgctaaatatttgtttgccttgat 66
||||||||||||||| ||||||||||||| || |||| | || || |||||| |||
Sbjct: 25 gatccgcctggctccttgtatgccaactgagaagcttgttgaacat---tttgccaggat 81
Query: 67 tcatagctggcgttcagggagtcaagcag 95
||||||||||| ||||||||||||||||
Sbjct: 82 tcatagctggcactcagggagtcaagcag 110
>51364_ppt-miR160f:pmrd
Length = 138
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 12 gcctggctccctgtatgccaactgcg 37
|||||||||||||||||||| |||||
Sbjct: 31 gcctggctccctgtatgccacctgcg 56
>51359_ppt-miR160a:pmrd
Length = 99
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 12 gcctggctccctgtatgccaactgcg 37
|||||||||||||||||||| |||||
Sbjct: 12 gcctggctccctgtatgccacctgcg 37
>51362_ppt-miR160d:pmrd
Length = 100
Score = 42.1 bits (21), Expect = 8e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 65 attcatagctggcgttcagggagtcaagcagac 97
||||||||||||||| |||||| |||||||||
Sbjct: 62 attcatagctggcgtggagggagccaagcagac 94
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 7 gatccgcctggctccctgtatgcc 30
|||||||||||||||||| |||||
Sbjct: 7 gatccgcctggctccctgcatgcc 30
>51361_ppt-miR160c:pmrd
Length = 100
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 7 gatccgcctggctccctgtatgcca 31
|||||||||||||||||| ||||||
Sbjct: 7 gatccgcctggctccctgcatgcca 31
>54947_zma-miR160m:pmrd
Length = 81
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgtatgcca 31
||||||||||||||||||||
Sbjct: 2 gcctggctccctgtatgcca 21
>54946_zma-miR160i:pmrd
Length = 81
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgtatgcca 31
||||||||||||||||||||
Sbjct: 3 gcctggctccctgtatgcca 22
>54945_zma-miR160h:pmrd
Length = 86
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgtatgcca 31
||||||||||||||||||||
Sbjct: 2 gcctggctccctgtatgcca 21
>54944_zma-miR160g:pmrd
Length = 86
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgtatgcca 31
||||||||||||||||||||
Sbjct: 2 gcctggctccctgtatgcca 21
>54942_zma-miR160e:pmrd
Length = 94
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgtatgcca 31
||||||||||||||||||||
Sbjct: 10 gcctggctccctgtatgcca 29
>54941_zma-miR160d:pmrd
Length = 142
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgtatgcca 31
||||||||||||||||||||
Sbjct: 22 gcctggctccctgtatgcca 41
>54940_zma-miR160c:pmrd
Length = 100
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgtatgcca 31
||||||||||||||||||||
Sbjct: 8 gcctggctccctgtatgcca 27
>54939_zma-miR160b:pmrd
Length = 121
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgtatgcca 31
||||||||||||||||||||
Sbjct: 22 gcctggctccctgtatgcca 41
>54938_zma-miR160a:pmrd
Length = 104
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgtatgcca 31
||||||||||||||||||||
Sbjct: 11 gcctggctccctgtatgcca 30
>54783_vvi-miR160f:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgtatgcca 31
||||||||||||||||||||
Sbjct: 12 gcctggctccctgtatgcca 31
>54781_vvi-miR160d:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgtatgcca 31
||||||||||||||||||||
Sbjct: 12 gcctggctccctgtatgcca 31
>54780_vvi-miR160c:pmrd
Length = 106
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgtatgcca 31
||||||||||||||||||||
Sbjct: 12 gcctggctccctgtatgcca 31
>54759_ttu-miR160a:pmrd
Length = 87
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgtatgcca 31
||||||||||||||||||||
Sbjct: 2 gcctggctccctgtatgcca 21
>54675_tae-miR160:pmrd
Length = 148
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgtatgcca 31
||||||||||||||||||||
Sbjct: 23 gcctggctccctgtatgcca 42
>54575_smo-miR160b:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgtatgcca 31
||||||||||||||||||||
Sbjct: 14 gcctggctccctgtatgcca 33
>54574_smo-miR160a:pmrd
Length = 106
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgtatgcca 31
||||||||||||||||||||
Sbjct: 12 gcctggctccctgtatgcca 31
>54541_sly-miR160a:pmrd
Length = 129
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgtatgcca 31
||||||||||||||||||||
Sbjct: 21 gcctggctccctgtatgcca 40
>54408_sbi-miR160e:pmrd
Length = 95
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgtatgcca 31
||||||||||||||||||||
Sbjct: 2 gcctggctccctgtatgcca 21
>54407_sbi-miR160d:pmrd
Length = 100
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgtatgcca 31
||||||||||||||||||||
Sbjct: 2 gcctggctccctgtatgcca 21
>54406_sbi-miR160c:pmrd
Length = 83
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgtatgcca 31
||||||||||||||||||||
Sbjct: 2 gcctggctccctgtatgcca 21
>54405_sbi-miR160b:pmrd
Length = 82
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgtatgcca 31
||||||||||||||||||||
Sbjct: 2 gcctggctccctgtatgcca 21
>54404_sbi-miR160a:pmrd
Length = 84
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgtatgcca 31
||||||||||||||||||||
Sbjct: 2 gcctggctccctgtatgcca 21
>53874_ptc-miRf12052-akr:pmrd
Length = 110
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgtatgcca 31
||||||||||||||||||||
Sbjct: 13 gcctggctccctgtatgcca 32
>51611_ptc-miR160d:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgtatgcca 31
||||||||||||||||||||
Sbjct: 12 gcctggctccctgtatgcca 31
>51610_ptc-miR160c:pmrd
Length = 98
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgtatgcca 31
||||||||||||||||||||
Sbjct: 12 gcctggctccctgtatgcca 31
>51609_ptc-miR160b:pmrd
Length = 98
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgtatgcca 31
||||||||||||||||||||
Sbjct: 12 gcctggctccctgtatgcca 31
>51608_ptc-miR160a:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgtatgcca 31
||||||||||||||||||||
Sbjct: 12 gcctggctccctgtatgcca 31
>51363_ppt-miR160e:pmrd
Length = 138
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgtatgcca 31
||||||||||||||||||||
Sbjct: 31 gcctggctccctgtatgcca 50
>51334_pga-miR160:pmrd
Length = 80
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgtatgcca 31
||||||||||||||||||||
Sbjct: 2 gcctggctccctgtatgcca 21
>48833_osa-miR160n:pmrd
Length = 131
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgtatgcca 31
||||||||||||||||||||
Sbjct: 2 gcctggctccctgtatgcca 21
>48832_osa-miR160m:pmrd
Length = 82
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgtatgcca 31
||||||||||||||||||||
Sbjct: 2 gcctggctccctgtatgcca 21
>48829_osa-miR160d:pmrd
Length = 142
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgtatgcca 31
||||||||||||||||||||
Sbjct: 9 gcctggctccctgtatgcca 28
>48828_osa-miR160c:pmrd
Length = 99
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgtatgcca 31
||||||||||||||||||||
Sbjct: 8 gcctggctccctgtatgcca 27
>48827_osa-miR160b:pmrd
Length = 139
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgtatgcca 31
||||||||||||||||||||
Sbjct: 31 gcctggctccctgtatgcca 50
>48826_osa-miR160a:pmrd
Length = 88
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgtatgcca 31
||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgcca 24
>48791_oba-miR160:pmrd
Length = 90
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgtatgcca 31
||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgcca 24
>48704_mtr-miR160e:pmrd
Length = 91
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgtatgcca 31
||||||||||||||||||||
Sbjct: 7 gcctggctccctgtatgcca 26
>48703_mtr-miR160d:pmrd
Length = 91
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgtatgcca 31
||||||||||||||||||||
Sbjct: 7 gcctggctccctgtatgcca 26
>48702_mtr-miR160b:pmrd
Length = 91
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgtatgcca 31
||||||||||||||||||||
Sbjct: 7 gcctggctccctgtatgcca 26
>48658_hvv-miR160a:pmrd
Length = 344
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgtatgcca 31
||||||||||||||||||||
Sbjct: 325 gcctggctccctgtatgcca 344
>48542_gma-miR160a:pmrd
Length = 119
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgtatgcca 31
||||||||||||||||||||
Sbjct: 22 gcctggctccctgtatgcca 41
>48397_bra-miR160a:pmrd
Length = 127
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgtatgcca 31
||||||||||||||||||||
Sbjct: 27 gcctggctccctgtatgcca 46
>48396_bra-miR160a:pmrd
Length = 127
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgtatgcca 31
||||||||||||||||||||
Sbjct: 27 gcctggctccctgtatgcca 46
>47338_ath-miRf10238-akr:pmrd
Length = 89
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgtatgcca 31
||||||||||||||||||||
Sbjct: 6 gcctggctccctgtatgcca 25
>47213_ath-miRf10113-akr:pmrd
Length = 85
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgtatgcca 31
||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgcca 24
>46936_ath-miR160c:pmrd
Length = 89
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgtatgcca 31
||||||||||||||||||||
Sbjct: 6 gcctggctccctgtatgcca 25
>46935_ath-miR160b:pmrd
Length = 89
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgtatgcca 31
||||||||||||||||||||
Sbjct: 6 gcctggctccctgtatgcca 25
>46934_ath-miR160a:pmrd
Length = 85
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgtatgcca 31
||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgcca 24
>46865_aqc-miR160b:pmrd
Length = 82
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 gcctggctccctgtatgcca 31
||||||||||||||||||||
Sbjct: 2 gcctggctccctgtatgcca 21
