miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51363_ppt-miR160e:pmrd
Length = 138
Score = 274 bits (138), Expect = 2e-74
Identities = 138/138 (100%)
Strand = Plus / Plus
Query: 1 ctgcagaaatcaatgggggaaactggcactgcctggctccctgtatgccacttgcgaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgcagaaatcaatgggggaaactggcactgcctggctccctgtatgccacttgcgaatt 60
Query: 61 ttggcaaaacttgtggcagggtacgtagctgccatacagggagtcagacagaccttgcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttggcaaaacttgtggcagggtacgtagctgccatacagggagtcagacagaccttgcat 120
Query: 121 cttcccggattctcatga 138
||||||||||||||||||
Sbjct: 121 cttcccggattctcatga 138
>51365_ppt-miR160g:pmrd
Length = 138
Score = 91.7 bits (46), Expect = 1e-19
Identities = 106/126 (84%)
Strand = Plus / Plus
Query: 6 gaaatcaatgggggaaactggcactgcctggctccctgtatgccacttgcgaattttggc 65
||||||||||||| | | ||| |||||||||||| ||||||||| |||||| ||| |
Sbjct: 6 gaaatcaatggggaatattggacctgcctggctccttgtatgccatctgcgaagcttgac 65
Query: 66 aaaacttgtggcagggtacgtagctgccatacagggagtcagacagaccttgcatcttcc 125
|||||| || |||||||| |||||||||| |||||||||||||||||| | | ||||||
Sbjct: 66 aaaactattgccagggtacatagctgccatgcagggagtcagacagaccgtacgtcttcc 125
Query: 126 cggatt 131
| ||||
Sbjct: 126 cagatt 131
>51361_ppt-miR160c:pmrd
Length = 100
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 31 gcctggctccctgtatgccacttgcgaattttggcaaa 68
||||||||||||| ||||||||||||||| ||| ||||
Sbjct: 12 gcctggctccctgcatgccacttgcgaatcttgccaaa 49
>51364_ppt-miR160f:pmrd
Length = 138
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 28 actgcctggctccctgtatgccacttgcg 56
|||||||||||||||||||||||| ||||
Sbjct: 28 actgcctggctccctgtatgccacctgcg 56
>51359_ppt-miR160a:pmrd
Length = 99
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 28 actgcctggctccctgtatgccacttgcg 56
|||||||||||||||||||||||| ||||
Sbjct: 9 actgcctggctccctgtatgccacctgcg 37
>51367_ppt-miR160i:pmrd
Length = 139
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 31 gcctggctccctgtatgccacttgcgaa 58
||||||||||||||||||||| ||||||
Sbjct: 31 gcctggctccctgtatgccacctgcgaa 58
>54946_zma-miR160i:pmrd
Length = 81
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 30 tgcctggctccctgtatgccact 52
|||||||||||||||||||||||
Sbjct: 2 tgcctggctccctgtatgccact 24
>54942_zma-miR160e:pmrd
Length = 94
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 30 tgcctggctccctgtatgccact 52
|||||||||||||||||||||||
Sbjct: 9 tgcctggctccctgtatgccact 31
>54941_zma-miR160d:pmrd
Length = 142
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 30 tgcctggctccctgtatgccact 52
|||||||||||||||||||||||
Sbjct: 21 tgcctggctccctgtatgccact 43
>54940_zma-miR160c:pmrd
Length = 100
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 30 tgcctggctccctgtatgccact 52
|||||||||||||||||||||||
Sbjct: 7 tgcctggctccctgtatgccact 29
>54759_ttu-miR160a:pmrd
Length = 87
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 30 tgcctggctccctgtatgccact 52
|||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccact 23
>54675_tae-miR160:pmrd
Length = 148
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 30 tgcctggctccctgtatgccact 52
|||||||||||||||||||||||
Sbjct: 22 tgcctggctccctgtatgccact 44
>54575_smo-miR160b:pmrd
Length = 108
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 29 ctgcctggctccctgtatgccac 51
|||||||||||||||||||||||
Sbjct: 12 ctgcctggctccctgtatgccac 34
>54408_sbi-miR160e:pmrd
Length = 95
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 30 tgcctggctccctgtatgccact 52
|||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccact 23
>54407_sbi-miR160d:pmrd
Length = 100
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 30 tgcctggctccctgtatgccact 52
|||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccact 23
>54406_sbi-miR160c:pmrd
Length = 83
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 30 tgcctggctccctgtatgccact 52
|||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccact 23
>48833_osa-miR160n:pmrd
Length = 131
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 30 tgcctggctccctgtatgccact 52
|||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccact 23
>48832_osa-miR160m:pmrd
Length = 82
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 30 tgcctggctccctgtatgccact 52
|||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccact 23
>48829_osa-miR160d:pmrd
Length = 142
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 30 tgcctggctccctgtatgccact 52
|||||||||||||||||||||||
Sbjct: 8 tgcctggctccctgtatgccact 30
>48828_osa-miR160c:pmrd
Length = 99
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 30 tgcctggctccctgtatgccact 52
|||||||||||||||||||||||
Sbjct: 7 tgcctggctccctgtatgccact 29
>48827_osa-miR160b:pmrd
Length = 139
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 30 tgcctggctccctgtatgccact 52
|||||||||||||||||||||||
Sbjct: 30 tgcctggctccctgtatgccact 52
>48791_oba-miR160:pmrd
Length = 90
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 30 tgcctggctccctgtatgccact 52
|||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccact 26
>54947_zma-miR160m:pmrd
Length = 81
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 30 tgcctggctccctgtatgccac 51
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>54945_zma-miR160h:pmrd
Length = 86
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 30 tgcctggctccctgtatgccac 51
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>54944_zma-miR160g:pmrd
Length = 86
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 30 tgcctggctccctgtatgccac 51
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>54939_zma-miR160b:pmrd
Length = 121
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 30 tgcctggctccctgtatgccac 51
||||||||||||||||||||||
Sbjct: 21 tgcctggctccctgtatgccac 42
>54938_zma-miR160a:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 30 tgcctggctccctgtatgccac 51
||||||||||||||||||||||
Sbjct: 10 tgcctggctccctgtatgccac 31
>54783_vvi-miR160f:pmrd
Length = 102
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 30 tgcctggctccctgtatgccacttgc 55
||||||||||||||||||||| ||||
Sbjct: 11 tgcctggctccctgtatgccatttgc 36
>54781_vvi-miR160d:pmrd
Length = 102
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 30 tgcctggctccctgtatgccacttgc 55
||||||||||||||||||||| ||||
Sbjct: 11 tgcctggctccctgtatgccatttgc 36
>54780_vvi-miR160c:pmrd
Length = 106
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 30 tgcctggctccctgtatgccac 51
||||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgccac 32
>54574_smo-miR160a:pmrd
Length = 106
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 29 ctgcctggctccctgtatgcca 50
||||||||||||||||||||||
Sbjct: 10 ctgcctggctccctgtatgcca 31
>54541_sly-miR160a:pmrd
Length = 129
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 30 tgcctggctccctgtatgccacttgc 55
||||||||||||||||||||| ||||
Sbjct: 20 tgcctggctccctgtatgccatttgc 45
>54405_sbi-miR160b:pmrd
Length = 82
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 30 tgcctggctccctgtatgccac 51
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>54404_sbi-miR160a:pmrd
Length = 84
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 30 tgcctggctccctgtatgccac 51
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>53874_ptc-miRf12052-akr:pmrd
Length = 110
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 30 tgcctggctccctgtatgccac 51
||||||||||||||||||||||
Sbjct: 12 tgcctggctccctgtatgccac 33
>51611_ptc-miR160d:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 30 tgcctggctccctgtatgccac 51
||||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgccac 32
>51610_ptc-miR160c:pmrd
Length = 98
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 30 tgcctggctccctgtatgccacttgc 55
||||||||||||||||||||| ||||
Sbjct: 11 tgcctggctccctgtatgccatttgc 36
>51609_ptc-miR160b:pmrd
Length = 98
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 30 tgcctggctccctgtatgccacttgc 55
||||||||||||||||||||| ||||
Sbjct: 11 tgcctggctccctgtatgccatttgc 36
>51608_ptc-miR160a:pmrd
Length = 102
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 30 tgcctggctccctgtatgccac 51
||||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgccac 32
>51334_pga-miR160:pmrd
Length = 80
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 30 tgcctggctccctgtatgccac 51
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>48826_osa-miR160a:pmrd
Length = 88
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 30 tgcctggctccctgtatgccac 51
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>47338_ath-miRf10238-akr:pmrd
Length = 89
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 30 tgcctggctccctgtatgccac 51
||||||||||||||||||||||
Sbjct: 5 tgcctggctccctgtatgccac 26
>46936_ath-miR160c:pmrd
Length = 89
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 30 tgcctggctccctgtatgccac 51
||||||||||||||||||||||
Sbjct: 5 tgcctggctccctgtatgccac 26
>46935_ath-miR160b:pmrd
Length = 89
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 30 tgcctggctccctgtatgccac 51
||||||||||||||||||||||
Sbjct: 5 tgcctggctccctgtatgccac 26
>46865_aqc-miR160b:pmrd
Length = 82
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 30 tgcctggctccctgtatgccacttgc 55
||||||||||||||||||||| ||||
Sbjct: 1 tgcctggctccctgtatgccatttgc 26
>48704_mtr-miR160e:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 30 tgcctggctccctgtatgcca 50
|||||||||||||||||||||
Sbjct: 6 tgcctggctccctgtatgcca 26
>48703_mtr-miR160d:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 30 tgcctggctccctgtatgcca 50
|||||||||||||||||||||
Sbjct: 6 tgcctggctccctgtatgcca 26
>48702_mtr-miR160b:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 30 tgcctggctccctgtatgcca 50
|||||||||||||||||||||
Sbjct: 6 tgcctggctccctgtatgcca 26
>48658_hvv-miR160a:pmrd
Length = 344
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 30 tgcctggctccctgtatgcca 50
|||||||||||||||||||||
Sbjct: 324 tgcctggctccctgtatgcca 344
>48542_gma-miR160a:pmrd
Length = 119
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 30 tgcctggctccctgtatgcca 50
|||||||||||||||||||||
Sbjct: 21 tgcctggctccctgtatgcca 41
>48397_bra-miR160a:pmrd
Length = 127
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 30 tgcctggctccctgtatgcca 50
|||||||||||||||||||||
Sbjct: 26 tgcctggctccctgtatgcca 46
>48396_bra-miR160a:pmrd
Length = 127
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 30 tgcctggctccctgtatgcca 50
|||||||||||||||||||||
Sbjct: 26 tgcctggctccctgtatgcca 46
>47213_ath-miRf10113-akr:pmrd
Length = 85
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 30 tgcctggctccctgtatgcca 50
|||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgcca 24
>46934_ath-miR160a:pmrd
Length = 85
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 30 tgcctggctccctgtatgcca 50
|||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgcca 24
