miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;ABEU01014597.1/43590-43504 145481:Physcomitrella
           patens subsp. patens
          Length = 87

 Score =  172 bits (87), Expect = 8e-43
 Identities = 87/87 (100%)
 Strand = Plus / Plus

                                                                       
Query: 27  cactgcctggctccctgtatgccacttgcgaattttggcaaaacttgtggcagggtacgt 86
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   cactgcctggctccctgtatgccacttgcgaattttggcaaaacttgtggcagggtacgt 60

                                      
Query: 87  agctgccatacagggagtcagacagac 113
           |||||||||||||||||||||||||||
Sbjct: 61  agctgccatacagggagtcagacagac 87




>RF00247;mir-160;ABEU01007064.1/27442-27356 145481:Physcomitrella
          patens subsp. patens
          Length = 87

 Score = 50.1 bits (25), Expect = 8e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 28 actgcctggctccctgtatgccacttgcg 56
          |||||||||||||||||||||||| ||||
Sbjct: 2  actgcctggctccctgtatgccacctgcg 30




>RF00247;mir-160;ABEU01009375.1/173043-172956
          145481:Physcomitrella patens subsp. patens
          Length = 88

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 31 gcctggctccctgtatgccacttgcgaa 58
          ||||||||||||||||||||| ||||||
Sbjct: 5  gcctggctccctgtatgccacctgcgaa 32




>RF00247;mir-160;EU945131.1/219-303 4577:Zea mays
          Length = 85

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 30 tgcctggctccctgtatgccact 52
          |||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccact 26




>RF00247;mir-160;ABXC01000057.1/79229-79124 4558:Sorghum bicolor
          (sorghum)
          Length = 106

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 30 tgcctggctccctgtatgccact 52
          |||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccact 26




>RF00247;mir-160;ABXC01004530.1/55208-55296 4558:Sorghum bicolor
          (sorghum)
          Length = 89

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 30 tgcctggctccctgtatgccact 52
          |||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccact 26




>RF00247;mir-160;ABXC01000819.1/394312-394212 4558:Sorghum bicolor
          (sorghum)
          Length = 101

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 30 tgcctggctccctgtatgccact 52
          |||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccact 26




>RF00247;mir-160;EU798771.1/193-98 58934:Zizania latifolia
          Length = 96

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 30 tgcctggctccctgtatgccact 52
          |||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccact 26




>RF00247;mir-160;AAAA02022910.1/14752-14660 39946:Oryza sativa
          Indica Group
          Length = 93

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 30 tgcctggctccctgtatgccact 52
          |||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccact 26




>RF00247;mir-160;AAAA02020747.1/14884-14971 39946:Oryza sativa
          Indica Group
          Length = 88

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 30 tgcctggctccctgtatgccact 52
          |||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccact 26




>RF00247;mir-160;AAAA02011132.1/25365-25500 39946:Oryza sativa
          Indica Group
          Length = 136

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 30 tgcctggctccctgtatgccact 52
          |||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccact 26




>RF00247;mir-160;DQ455766.1/101-12 169985:Oenocarpus bataua
          Length = 90

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 30 tgcctggctccctgtatgccact 52
          |||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccact 26




>RF00247;mir-160;ABIM01012188.1/1387-1471 3649:Carica papaya
          (papaya)
          Length = 85

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 30 tgcctggctccctgtatgccacttgc 55
          ||||||||||||||||||||| ||||
Sbjct: 4  tgcctggctccctgtatgccatttgc 29




>RF00247;mir-160;ABIM01022486.1/4654-4741 3649:Carica papaya
          (papaya)
          Length = 88

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 30 tgcctggctccctgtatgccac 51
          ||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccac 25




>RF00247;mir-160;AC189245.2/87285-87372 51351:Brassica rapa subsp.
          pekinensis
          Length = 88

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 30 tgcctggctccctgtatgccac 51
          ||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccac 25




>RF00247;mir-160;AC183492.1/98297-98383 3712:Brassica oleracea
          Length = 87

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 30 tgcctggctccctgtatgccac 51
          ||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccac 25




>RF00247;mir-160;EU548646.1/366-280 3702:Arabidopsis thaliana
          (thale cress)
          Length = 87

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 30 tgcctggctccctgtatgccac 51
          ||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccac 25




>RF00247;mir-160;Z97344.2/54320-54406 3702:Arabidopsis thaliana
          (thale cress)
          Length = 87

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 30 tgcctggctccctgtatgccac 51
          ||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccac 25




>RF00247;mir-160;AARH01003540.1/65975-65890 3694:Populus
          trichocarpa
          Length = 86

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 30 tgcctggctccctgtatgccacttgc 55
          ||||||||||||||||||||| ||||
Sbjct: 4  tgcctggctccctgtatgccatttgc 29




>RF00247;mir-160;AARH01000886.1/36098-36187 3694:Populus
          trichocarpa
          Length = 90

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 30 tgcctggctccctgtatgccac 51
          ||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccac 25




>RF00247;mir-160;AY728424.1/1-89 3694:Populus trichocarpa
          Length = 89

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 30 tgcctggctccctgtatgccac 51
          ||||||||||||||||||||||
Sbjct: 3  tgcctggctccctgtatgccac 24




>RF00247;mir-160;AASG02024242.1/1209-1298 3988:Ricinus communis
          (castor bean)
          Length = 90

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 30 tgcctggctccctgtatgccac 51
          ||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccac 25




>RF00247;mir-160;AC196190.2/61996-61908 4081:Solanum lycopersicum
          Length = 89

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 30 tgcctggctccctgtatgccacttgc 55
          ||||||||||||||||||||| ||||
Sbjct: 4  tgcctggctccctgtatgccatttgc 29




>RF00247;mir-160;CAAP02000723.1/67959-67874 29760:Vitis vinifera
          Length = 86

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 30 tgcctggctccctgtatgccacttgc 55
          ||||||||||||||||||||| ||||
Sbjct: 4  tgcctggctccctgtatgccatttgc 29




>RF00247;mir-160;CAAP02006197.1/486-575 29760:Vitis vinifera
          Length = 90

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 30 tgcctggctccctgtatgccac 51
          ||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccac 25




>RF00247;mir-160;CAAP02000343.1/40092-40007 29760:Vitis vinifera
          Length = 86

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 30 tgcctggctccctgtatgccacttgc 55
          ||||||||||||||||||||| ||||
Sbjct: 4  tgcctggctccctgtatgccatttgc 29




>RF00247;mir-160;FM878703.1/301-387 213592:Musa acuminata subsp.
          burmannicoides
          Length = 87

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 30 tgcctggctccctgtatgccac 51
          ||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccac 25




>RF00247;mir-160;EU974767.1/328-419 4577:Zea mays
          Length = 92

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 30 tgcctggctccctgtatgccac 51
          ||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccac 25




>RF00247;mir-160;EU975926.1/304-390 4577:Zea mays
          Length = 87

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 30 tgcctggctccctgtatgccac 51
          ||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccac 25




>RF00247;mir-160;ABXC01002436.1/220577-220488 4558:Sorghum bicolor
          (sorghum)
          Length = 90

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 30 tgcctggctccctgtatgccac 51
          ||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccac 25




>RF00247;mir-160;AAAA02005231.1/55127-55040 39946:Oryza sativa
          Indica Group
          Length = 88

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 30 tgcctggctccctgtatgccac 51
          ||||||||||||||||||||||
Sbjct: 4  tgcctggctccctgtatgccac 25