miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;ABEU01014597.1/43590-43504 145481:Physcomitrella
patens subsp. patens
Length = 87
Score = 81.8 bits (41), Expect = 2e-15
Identities = 74/85 (87%)
Strand = Plus / Plus
Query: 29 ctgcctggctccttgtatgccatctgcgaagcttgacaaaactattgccagggtacatag 88
|||||||||||| ||||||||| |||||| ||| ||||||| || |||||||| |||
Sbjct: 3 ctgcctggctccctgtatgccacttgcgaattttggcaaaacttgtggcagggtacgtag 62
Query: 89 ctgccatgcagggagtcagacagac 113
||||||| |||||||||||||||||
Sbjct: 63 ctgccatacagggagtcagacagac 87
>RF00247;mir-160;AC161399.2/100084-100170 3880:Medicago truncatula
(barrel medic)
Length = 87
Score = 52.0 bits (26), Expect = 2e-06
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 30 tgcctggctccttgtatgccatctgcgaagcttgacaaaactattg 75
||||||||||| || |||||||||| |||||||| |||||| ||||
Sbjct: 4 tgcctggctccctgaatgccatctgagaagcttgtcaaaacgattg 49
>RF00247;mir-160;ABIM01017407.1/6156-6071 3649:Carica papaya
(papaya)
Length = 86
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 30 tgcctggctccttgtatgccatctgcgaagc 60
||||||||||| |||||||||||||| ||||
Sbjct: 4 tgcctggctccctgtatgccatctgcaaagc 34
