miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51385_ppt-miR319b:pmrd
Length = 160
Score = 317 bits (160), Expect = 1e-87
Identities = 160/160 (100%)
Strand = Plus / Plus
Query: 1 gagctcttttcagtccagtagcagctaatgtcgaaggttgtaccgctgccgactcaaact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gagctcttttcagtccagtagcagctaatgtcgaaggttgtaccgctgccgactcaaact 60
Query: 61 tccggcttccatatcacgacgcgtgatatggaatccgaaggtctgatccgggagctgatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tccggcttccatatcacgacgcgtgatatggaatccgaaggtctgatccgggagctgatc 120
Query: 121 gatctccaggttagcatctcttggactgaagggagctcct 160
||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gatctccaggttagcatctcttggactgaagggagctcct 160
>51389_ppt-miR319d:pmrd
Length = 170
Score = 139 bits (70), Expect = 7e-34
Identities = 116/130 (89%), Gaps = 1/130 (0%)
Strand = Plus / Plus
Query: 30 gtcgaaggttgtaccgctgccgactcaaacttccggcttccatatcacgacgcgtgatat 89
|||||||||||| | |||||||||||||||||||||||||| |||| | || | || |||
Sbjct: 36 gtcgaaggttgtgctgctgccgactcaaacttccggcttccctatc-caacccctggtat 94
Query: 90 ggaatccgaaggtctgatccgggagctgatcgatctccaggttagcatctcttggactga 149
|||||||||| ||||||| ||||||||| || |||||| | |||||||||||||||||||
Sbjct: 95 ggaatccgaatgtctgatacgggagctgttcaatctccggcttagcatctcttggactga 154
Query: 150 agggagctcc 159
||||||||||
Sbjct: 155 agggagctcc 164
>51388_ppt-miR319d:pmrd
Length = 170
Score = 139 bits (70), Expect = 7e-34
Identities = 116/130 (89%), Gaps = 1/130 (0%)
Strand = Plus / Plus
Query: 30 gtcgaaggttgtaccgctgccgactcaaacttccggcttccatatcacgacgcgtgatat 89
|||||||||||| | |||||||||||||||||||||||||| |||| | || | || |||
Sbjct: 36 gtcgaaggttgtgctgctgccgactcaaacttccggcttccctatc-caacccctggtat 94
Query: 90 ggaatccgaaggtctgatccgggagctgatcgatctccaggttagcatctcttggactga 149
|||||||||| ||||||| ||||||||| || |||||| | |||||||||||||||||||
Sbjct: 95 ggaatccgaatgtctgatacgggagctgttcaatctccggcttagcatctcttggactga 154
Query: 150 agggagctcc 159
||||||||||
Sbjct: 155 agggagctcc 164
>51387_ppt-miR319d:pmrd
Length = 170
Score = 139 bits (70), Expect = 7e-34
Identities = 116/130 (89%), Gaps = 1/130 (0%)
Strand = Plus / Plus
Query: 30 gtcgaaggttgtaccgctgccgactcaaacttccggcttccatatcacgacgcgtgatat 89
|||||||||||| | |||||||||||||||||||||||||| |||| | || | || |||
Sbjct: 36 gtcgaaggttgtgctgctgccgactcaaacttccggcttccctatc-caacccctggtat 94
Query: 90 ggaatccgaaggtctgatccgggagctgatcgatctccaggttagcatctcttggactga 149
|||||||||| ||||||| ||||||||| || |||||| | |||||||||||||||||||
Sbjct: 95 ggaatccgaatgtctgatacgggagctgttcaatctccggcttagcatctcttggactga 154
Query: 150 agggagctcc 159
||||||||||
Sbjct: 155 agggagctcc 164
>51386_ppt-miR319c:pmrd
Length = 189
Score = 67.9 bits (34), Expect = 2e-12
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 90 ggaatccgaaggtctgatccgggagctgatcgatctccaggttagcatctcttggactga 149
|||||||||| ||||||| |||||||||| || ||| || | ||| |||||||||||||
Sbjct: 104 ggaatccgaatgtctgatgcgggagctgagcggtcttcaactcagcttctcttggactga 163
Query: 150 agggagctcc 159
||||||||||
Sbjct: 164 agggagctcc 173
>51390_ppt-miR319e:pmrd
Length = 174
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 35 aggttgtaccgctgccgactcaaacttccggcttcc 70
|||||| || |||||||| |||||||||||||||||
Sbjct: 43 aggttgcactgctgccgattcaaacttccggcttcc 78
Score = 46.1 bits (23), Expect = 8e-06
Identities = 60/71 (84%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 90 ggaatccgaaggtctgatccgggagctgatcgatctccaggtt-agcatctcttggactg 148
|||||||||| ||||||| ||||||||| || ||| || || ||| |||||||||||
Sbjct: 96 ggaatccgaatgtctgatgcgggagctgtgcggtcttcaactttagcgcctcttggactg 155
Query: 149 aagggagctcc 159
|||||||||||
Sbjct: 156 aagggagctcc 166
>51384_ppt-miR319a:pmrd
Length = 169
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 137 tctcttggactgaagggagctcc 159
|||||||||||||||||||||||
Sbjct: 145 tctcttggactgaagggagctcc 167
>54843_vvi-miR319b:pmrd
Length = 194
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 139 tcttggactgaagggagctcc 159
|||||||||||||||||||||
Sbjct: 161 tcttggactgaagggagctcc 181
>54380_pvu-miR319c:pmrd
Length = 734
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 140 cttggactgaagggagctcct 160
|||||||||||||||||||||
Sbjct: 409 cttggactgaagggagctcct 429
>51713_ptc-miR319g:pmrd
Length = 204
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 140 cttggactgaagggagctcct 160
|||||||||||||||||||||
Sbjct: 175 cttggactgaagggagctcct 195
>51712_ptc-miR319f:pmrd
Length = 202
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 140 cttggactgaagggagctcct 160
|||||||||||||||||||||
Sbjct: 173 cttggactgaagggagctcct 193
>51351_ppl-miR319:pmrd
Length = 204
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 140 cttggactgaagggagctcct 160
|||||||||||||||||||||
Sbjct: 173 cttggactgaagggagctcct 193
>48687_ltu-miR319:pmrd
Length = 167
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 139 tcttggactgaagggagctcc 159
|||||||||||||||||||||
Sbjct: 146 tcttggactgaagggagctcc 166
>54846_vvi-miR319f:pmrd
Length = 193
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 140 cttggactgaagggagctcc 159
||||||||||||||||||||
Sbjct: 161 cttggactgaagggagctcc 180
>54845_vvi-miR319e:pmrd
Length = 107
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 141 ttggactgaagggagctcct 160
||||||||||||||||||||
Sbjct: 77 ttggactgaagggagctcct 96
>54844_vvi-miR319c:pmrd
Length = 182
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 140 cttggactgaagggagctcc 159
||||||||||||||||||||
Sbjct: 150 cttggactgaagggagctcc 169
>54686_tae-miR319a:pmrd
Length = 196
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 140 cttggactgaagggagctcc 159
||||||||||||||||||||
Sbjct: 176 cttggactgaagggagctcc 195
>54583_smo-miR319:pmrd
Length = 215
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 140 cttggactgaagggagctcc 159
||||||||||||||||||||
Sbjct: 185 cttggactgaagggagctcc 204
>52398_ptc-miRf10576-akr:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 141 ttggactgaagggagctcct 160
||||||||||||||||||||
Sbjct: 164 ttggactgaagggagctcct 183
>51714_ptc-miR319h:pmrd
Length = 195
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 141 ttggactgaagggagctcct 160
||||||||||||||||||||
Sbjct: 165 ttggactgaagggagctcct 184
>51711_ptc-miR319e:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 141 ttggactgaagggagctcct 160
||||||||||||||||||||
Sbjct: 164 ttggactgaagggagctcct 183
>51710_ptc-miR319d:pmrd
Length = 193
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 140 cttggactgaagggagctcc 159
||||||||||||||||||||
Sbjct: 164 cttggactgaagggagctcc 183
>51709_ptc-miR319c:pmrd
Length = 196
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 140 cttggactgaagggagctcc 159
||||||||||||||||||||
Sbjct: 167 cttggactgaagggagctcc 186
>51707_ptc-miR319a:pmrd
Length = 188
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 140 cttggactgaagggagctcc 159
||||||||||||||||||||
Sbjct: 159 cttggactgaagggagctcc 178
>48573_gma-miR319b:pmrd
Length = 208
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 140 cttggactgaagggagctcc 159
||||||||||||||||||||
Sbjct: 169 cttggactgaagggagctcc 188
>48572_gma-miR319a:pmrd
Length = 207
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 140 cttggactgaagggagctcc 159
||||||||||||||||||||
Sbjct: 168 cttggactgaagggagctcc 187
>46994_ath-miR319c:pmrd
Length = 199
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 141 ttggactgaagggagctcct 160
||||||||||||||||||||
Sbjct: 170 ttggactgaagggagctcct 189
>46993_ath-miR319b:pmrd
Length = 172
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 140 cttggactgaagggagctcc 159
||||||||||||||||||||
Sbjct: 151 cttggactgaagggagctcc 170
>46884_aqc-miR319:pmrd
Length = 177
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 140 cttggactgaagggagctcc 159
||||||||||||||||||||
Sbjct: 154 cttggactgaagggagctcc 173
