miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;ABEU01011353.1/55901-55718 145481:Physcomitrella
patens subsp. patens
Length = 184
Score = 317 bits (160), Expect = 3e-86
Identities = 160/160 (100%)
Strand = Plus / Plus
Query: 1 gagctcttttcagtccagtagcagctaatgtcgaaggttgtaccgctgccgactcaaact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 gagctcttttcagtccagtagcagctaatgtcgaaggttgtaccgctgccgactcaaact 72
Query: 61 tccggcttccatatcacgacgcgtgatatggaatccgaaggtctgatccgggagctgatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 tccggcttccatatcacgacgcgtgatatggaatccgaaggtctgatccgggagctgatc 132
Query: 121 gatctccaggttagcatctcttggactgaagggagctcct 160
||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 gatctccaggttagcatctcttggactgaagggagctcct 172
>RF00638;MIR159;ABEU01012145.1/27473-27654 145481:Physcomitrella
patens subsp. patens
Length = 182
Score = 139 bits (70), Expect = 1e-32
Identities = 116/130 (89%), Gaps = 1/130 (0%)
Strand = Plus / Plus
Query: 30 gtcgaaggttgtaccgctgccgactcaaacttccggcttccatatcacgacgcgtgatat 89
|||||||||||| | |||||||||||||||||||||||||| |||| | || | || |||
Sbjct: 41 gtcgaaggttgtgctgctgccgactcaaacttccggcttccctatc-caacccctggtat 99
Query: 90 ggaatccgaaggtctgatccgggagctgatcgatctccaggttagcatctcttggactga 149
|||||||||| ||||||| ||||||||| || |||||| | |||||||||||||||||||
Sbjct: 100 ggaatccgaatgtctgatacgggagctgttcaatctccggcttagcatctcttggactga 159
Query: 150 agggagctcc 159
||||||||||
Sbjct: 160 agggagctcc 169
>RF00638;MIR159;ABEU01002787.1/15883-15704 145481:Physcomitrella
patens subsp. patens
Length = 180
Score = 67.9 bits (34), Expect = 4e-11
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 90 ggaatccgaaggtctgatccgggagctgatcgatctccaggttagcatctcttggactga 149
|||||||||| ||||||| |||||||||| || ||| || | ||| |||||||||||||
Sbjct: 98 ggaatccgaatgtctgatgcgggagctgagcggtcttcaactcagcttctcttggactga 157
Query: 150 agggagctcc 159
||||||||||
Sbjct: 158 agggagctcc 167
>RF00638;MIR159;ABEU01006795.1/68509-68689 145481:Physcomitrella
patens subsp. patens
Length = 181
Score = 48.1 bits (24), Expect = 4e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 35 aggttgtaccgctgccgactcaaacttccggcttcc 70
|||||| || |||||||| |||||||||||||||||
Sbjct: 45 aggttgcactgctgccgattcaaacttccggcttcc 80
Score = 46.1 bits (23), Expect = 1e-04
Identities = 60/71 (84%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 90 ggaatccgaaggtctgatccgggagctgatcgatctccaggtt-agcatctcttggactg 148
|||||||||| ||||||| ||||||||| || ||| || || ||| |||||||||||
Sbjct: 98 ggaatccgaatgtctgatgcgggagctgtgcggtcttcaactttagcgcctcttggactg 157
Query: 149 aagggagctcc 159
|||||||||||
Sbjct: 158 aagggagctcc 168
