miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00714;MIR535;ABEU01009956.1/139970-139869 145481:Physcomitrella
patens subsp. patens
Length = 102
Score = 202 bits (102), Expect = 9e-52
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 17 agaacctaggtgacaacgagagagagcacgctggaatgcttttcatgcaatacgcttgga 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agaacctaggtgacaacgagagagagcacgctggaatgcttttcatgcaatacgcttgga 60
Query: 77 tgtgttctagcgtgccctctaccgttgtcgccaaacatcttc 118
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgtgttctagcgtgccctctaccgttgtcgccaaacatcttc 102
>RF00714;MIR535;ABEU01006897.1/4394-4494 145481:Physcomitrella
patens subsp. patens
Length = 101
Score = 105 bits (53), Expect = 2e-22
Identities = 78/85 (91%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 26 gtgacaacgagagagagcacgctggaatgcttttcatgcaatacgcttggatgtgttcta 85
|||||||||||||||||||||||||||||| ||||| |||||| || ||||||||||||
Sbjct: 10 gtgacaacgagagagagcacgctggaatgc-tttcacgcaataagcctggatgtgttctt 68
Query: 86 gcgtgccctctaccgttgtcgccaa 110
||||||||| | |||||||||||||
Sbjct: 69 gcgtgccctttcccgttgtcgccaa 93
>RF00714;MIR535;ABEU01004601.1/20377-20277 145481:Physcomitrella
patens subsp. patens
Length = 101
Score = 67.9 bits (34), Expect = 3e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 22 ctaggtgacaacgagagagagcacgctggaatgc 55
||||||||||||||||||||||||||||||||||
Sbjct: 6 ctaggtgacaacgagagagagcacgctggaatgc 39
>RF00714;MIR535;ABEU01003761.1/27167-27269 145481:Physcomitrella
patens subsp. patens
Length = 103
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 25 ggtgacaacgagagagagcacgctggaatgc 55
||||||||||||||||||||||| |||||||
Sbjct: 9 ggtgacaacgagagagagcacgccggaatgc 39
>RF00714;MIR535;ABIM01002931.1/4831-4931 3649:Carica papaya
(papaya)
Length = 101
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 25 ggtgacaacgagagagagcacgct 48
||||||||||||||||||||||||
Sbjct: 9 ggtgacaacgagagagagcacgct 32
>RF00714;MIR535;AAAA02031914.1/1343-1245 39946:Oryza sativa Indica
Group
Length = 99
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 25 ggtgacaacgagagagagcacgc 47
|||||||||||||||||||||||
Sbjct: 2 ggtgacaacgagagagagcacgc 24
>RF00714;MIR535;AASG02028037.1/959-864 3988:Ricinus communis
(castor bean)
Length = 96
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 27 tgacaacgagagagagcacgct 48
||||||||||||||||||||||
Sbjct: 11 tgacaacgagagagagcacgct 32
