miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41237_csi-MIR390:mirbase
Length = 154
Score = 281 bits (142), Expect = 7e-77
Identities = 142/142 (100%)
Strand = Plus / Plus
Query: 7 aaagtaaagaagaatctgttaagctcaggagggatagcgccatgggtgccatgaatatgg 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaagtaaagaagaatctgttaagctcaggagggatagcgccatgggtgccatgaatatgg 60
Query: 67 gaatgatctagggtttcatgataaataatgggcactggcgctatccatcctgagtttcat 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gaatgatctagggtttcatgataaataatgggcactggcgctatccatcctgagtttcat 120
Query: 127 ggcttcttcttactctctctct 148
||||||||||||||||||||||
Sbjct: 121 ggcttcttcttactctctctct 142
>41052_ghr-MIR390b:mirbase
Length = 132
Score = 73.8 bits (37), Expect = 3e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 15 gaagaatctgttaagctcaggagggatagcgccatgg 51
|||||||||||||||||||||||||||||||||||||
Sbjct: 6 gaagaatctgttaagctcaggagggatagcgccatgg 42
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 104 gcgctatccatcctgagtttcatggcttcttctt 137
||||||||||||||||||||||| | ||||||||
Sbjct: 94 gcgctatccatcctgagtttcatcggttcttctt 127
>41051_ghr-MIR390a:mirbase
Length = 124
Score = 73.8 bits (37), Expect = 3e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 15 gaagaatctgttaagctcaggagggatagcgccatgg 51
|||||||||||||||||||||||||||||||||||||
Sbjct: 3 gaagaatctgttaagctcaggagggatagcgccatgg 39
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 104 gcgctatccatcctgagtttcatggcttcttctt 137
||||||||||||||||||||||| | ||||||||
Sbjct: 91 gcgctatccatcctgagtttcatcggttcttctt 124
>41053_ghr-MIR390c:mirbase
Length = 114
Score = 69.9 bits (35), Expect = 5e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 17 agaatctgttaagctcaggagggatagcgccatgg 51
|||||||||||||||||||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagcgccatgg 35
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 104 gcgctatccatcctgagtttcat 126
|||||||||||||||||||||||
Sbjct: 87 gcgctatccatcctgagtttcat 109
>39862_aly-MIR390a:mirbase
Length = 129
Score = 69.9 bits (35), Expect = 5e-13
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 8 aagtaaagaagaatctgttaagctcaggagggatagcgccatg 50
||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 10 aagtagagaagaatctgtaaagctcaggagggatagcgccatg 52
Score = 54.0 bits (27), Expect = 3e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 102 tggcgctatccatcctgagtttcatggcttcttcttact 140
||||||||||||||||||||||||| | ||||||||||
Sbjct: 78 tggcgctatccatcctgagtttcattggctcttcttact 116
>41640_vvi-MIR390:mirbase
Length = 140
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 17 agaatctgttaagctcaggagggatagcgccatg 50
||||||||||||||||||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagcgccatg 34
Score = 44.1 bits (22), Expect = 3e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 102 tggcgctatccatcctgagtttcatggcttcttc 135
|||||||||| ||||||||||||| || ||||||
Sbjct: 107 tggcgctatctatcctgagtttcacgggttcttc 140
>41413_ptc-MIR390a:mirbase
Length = 119
Score = 67.9 bits (34), Expect = 2e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 17 agaatctgttaagctcaggagggatagcgccatg 50
||||||||||||||||||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagcgccatg 34
>40072_ath-MIR390a:mirbase
Length = 107
Score = 65.9 bits (33), Expect = 8e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 14 agaagaatctgttaagctcaggagggatagcgccatg 50
|||||||||||| ||||||||||||||||||||||||
Sbjct: 5 agaagaatctgtaaagctcaggagggatagcgccatg 41
Score = 54.0 bits (27), Expect = 3e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 102 tggcgctatccatcctgagtttcatggcttcttcttact 140
||||||||||||||||||||||||| | ||||||||||
Sbjct: 67 tggcgctatccatcctgagtttcattggctcttcttact 105
>40294_bna-MIR390c:mirbase
Length = 128
Score = 63.9 bits (32), Expect = 3e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 102 tggcgctatccatcctgagtttcatggcttcttctt 137
||||||||||||||||||||| ||||||||||||||
Sbjct: 83 tggcgctatccatcctgagttccatggcttcttctt 118
Score = 52.0 bits (26), Expect = 1e-07
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 9 agtaaagaagaatctgttaagctcaggagggatagcgccatg 50
|||| ||||| | |||| ||||||||||||||||||||||||
Sbjct: 5 agtagagaagtagctgtaaagctcaggagggatagcgccatg 46
>40293_bna-MIR390b:mirbase
Length = 105
Score = 63.9 bits (32), Expect = 3e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 14 agaagaatctgttaagctcaggagggatagcgccat 49
|||||||||||| |||||||||||||||||||||||
Sbjct: 5 agaagaatctgtaaagctcaggagggatagcgccat 40
Score = 46.1 bits (23), Expect = 7e-06
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 102 tggcgctatccatcctgagtttcatggcttcttcttact 140
||||||| ||||||||||||||||| | ||||||||||
Sbjct: 65 tggcgctgtccatcctgagtttcattggctcttcttact 103
>41416_ptc-MIR390d:mirbase
Length = 106
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 17 agaatctgttaagctcaggagggatagcgcc 47
|||||||||||||||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagcgcc 31
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 102 tggcgctatccatcctgagttt 123
||||||||||||||||||||||
Sbjct: 77 tggcgctatccatcctgagttt 98
>41415_ptc-MIR390c:mirbase
Length = 123
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 20 atctgttaagctcaggagggatagcgccatg 50
|||||||||||||||||||||||||||||||
Sbjct: 4 atctgttaagctcaggagggatagcgccatg 34
>41414_ptc-MIR390b:mirbase
Length = 106
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 17 agaatctgttaagctcaggagggatagcgcc 47
|||||||||||||||||||||||||||||||
Sbjct: 1 agaatctgttaagctcaggagggatagcgcc 31
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 102 tggcgctatccatcctgagtttcatggctt 131
||||||||||||||||||||||||| ||||
Sbjct: 77 tggcgctatccatcctgagtttcattgctt 106
>40468_gma-MIR390a:mirbase
Length = 105
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 17 agaatctgttaagctcaggagggatagcgccatgg 51
||||||||| |||||||||||||||||||||||||
Sbjct: 1 agaatctgtaaagctcaggagggatagcgccatgg 35
Score = 60.0 bits (30), Expect = 5e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 104 gcgctatccatcctgagtttcatggcttct 133
||||||||||||||||||||||||||||||
Sbjct: 67 gcgctatccatcctgagtttcatggcttct 96
>40467_gma-MIR390a:mirbase
Length = 105
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 17 agaatctgttaagctcaggagggatagcgccatgg 51
||||||||| |||||||||||||||||||||||||
Sbjct: 1 agaatctgtaaagctcaggagggatagcgccatgg 35
Score = 60.0 bits (30), Expect = 5e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 104 gcgctatccatcctgagtttcatggcttct 133
||||||||||||||||||||||||||||||
Sbjct: 67 gcgctatccatcctgagtttcatggcttct 96
>41131_tcc-MIR390b:mirbase
Length = 120
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 17 agaatctgttaagctcaggagggatagcgccat 49
||||||||| |||||||||||||||||||||||
Sbjct: 11 agaatctgtaaagctcaggagggatagcgccat 43
Score = 54.0 bits (27), Expect = 3e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 101 ctggcgctatccatcctgagtttcatggcttcttc 135
||||||||||| |||||||||||||||| ||||||
Sbjct: 76 ctggcgctatctatcctgagtttcatgggttcttc 110
>41130_tcc-MIR390a:mirbase
Length = 129
Score = 58.0 bits (29), Expect = 2e-09
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 9 agtaaagaagaatctgttaagctcaggagggatagcgccat 49
|||| |||||| ||||||||||||||||||||||||||||
Sbjct: 3 agtatagaagagcctgttaagctcaggagggatagcgccat 43
Score = 54.0 bits (27), Expect = 3e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 104 gcgctatccatcctgagtttcatggcttcttcttactct 142
||||||||||||||||||||||| | |||||||| ||||
Sbjct: 88 gcgctatccatcctgagtttcatcggttcttcttgctct 126
>40705_mtr-MIR390:mirbase
Length = 100
Score = 56.0 bits (28), Expect = 8e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 22 ctgttaagctcaggagggatagcgccat 49
||||||||||||||||||||||||||||
Sbjct: 1 ctgttaagctcaggagggatagcgccat 28
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 104 gcgctatccatcctgagtttcatgg 128
|||||||||||||||||||||||||
Sbjct: 76 gcgctatccatcctgagtttcatgg 100
>40292_bna-MIR390a:mirbase
Length = 144
Score = 56.0 bits (28), Expect = 8e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 102 tggcgctatccatcctgagtttcatggcttcttctt 137
||||||||||||||||||||| |||||||||||||
Sbjct: 93 tggcgctatccatcctgagttctatggcttcttctt 128
Score = 50.1 bits (25), Expect = 5e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 22 ctgttaagctcaggagggatagcgccatg 50
|||| ||||||||||||||||||||||||
Sbjct: 28 ctgtaaagctcaggagggatagcgccatg 56
>40073_ath-MIR390b:mirbase
Length = 120
Score = 56.0 bits (28), Expect = 8e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 102 tggcgctatccatcctgagtttcatggcttcttctt 137
||||||||||||||||||||| ||| ||||||||||
Sbjct: 85 tggcgctatccatcctgagttccatagcttcttctt 120
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 27 aagctcaggagggatagcgccatgg 51
|||||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccatgg 39
>39863_aly-MIR390b:mirbase
Length = 127
Score = 56.0 bits (28), Expect = 8e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 102 tggcgctatccatcctgagtttcatggcttcttctt 137
||||||||||||||||||||| ||| ||||||||||
Sbjct: 89 tggcgctatccatcctgagttccatagcttcttctt 124
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 27 aagctcaggagggatagcgccatg 50
||||||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgccatg 42
>40372_rco-MIR390b:mirbase
Length = 122
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 26 taagctcaggagggatagcgccatgg 51
||||||||||||||||||||||||||
Sbjct: 5 taagctcaggagggatagcgccatgg 30
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 104 gcgctatccatcctgagtttcat 126
|||||||||||||||||||||||
Sbjct: 96 gcgctatccatcctgagtttcat 118
>40371_rco-MIR390a:mirbase
Length = 108
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 22 ctgttaagctcaggagggatagcgcc 47
||||||||||||||||||||||||||
Sbjct: 1 ctgttaagctcaggagggatagcgcc 26
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 102 tggcgctatccatcctgagtttca 125
||||||||||||||||||||||||
Sbjct: 80 tggcgctatccatcctgagtttca 103
>40469_gma-MIR390b:mirbase
Length = 103
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 17 agaatctgttaagctcaggagggatagc 44
||||||||| ||||||||||||||||||
Sbjct: 1 agaatctgtaaagctcaggagggatagc 28
Score = 40.1 bits (20), Expect = 5e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 102 tggcgctatccatcctgagtttcatggcttct 133
|||||||||| ||| |||| ||||||||||||
Sbjct: 72 tggcgctatctatcttgagcttcatggcttct 103
>39485_ppt-MIR390a:mirbase
Length = 137
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 27 aagctcaggagggatagcgccat 49
|||||||||||||||||||||||
Sbjct: 16 aagctcaggagggatagcgccat 38
>42785_zma-MIR390b:mirbase
Length = 192
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 27 aagctcaggagggatagcgcc 47
|||||||||||||||||||||
Sbjct: 2 aagctcaggagggatagcgcc 22
>42784_zma-MIR390a:mirbase
Length = 181
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 27 aagctcaggagggatagcgcc 47
|||||||||||||||||||||
Sbjct: 2 aagctcaggagggatagcgcc 22
>42565_sbi-MIR390:mirbase
Length = 179
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 27 aagctcaggagggatagcgcc 47
|||||||||||||||||||||
Sbjct: 3 aagctcaggagggatagcgcc 23
>41996_osa-MIR390:mirbase
Length = 91
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 27 aagctcaggagggatagcgcc 47
|||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgcc 39
>41773_bdi-MIR390b:mirbase
Length = 186
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 27 aagctcaggagggatagcgcc 47
|||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgcc 39
>41772_bdi-MIR390:mirbase
Length = 209
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 27 aagctcaggagggatagcgcc 47
|||||||||||||||||||||
Sbjct: 31 aagctcaggagggatagcgcc 51
>39486_ppt-MIR390b:mirbase
Length = 175
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 27 aagctcaggagggatagcgcc 47
|||||||||||||||||||||
Sbjct: 28 aagctcaggagggatagcgcc 48
>39487_ppt-MIR390c:mirbase
Length = 135
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 28 agctcaggagggatagcgcc 47
||||||||||||||||||||
Sbjct: 14 agctcaggagggatagcgcc 33
