miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51473_ppt-miR1033c:pmrd
Length = 119
Score = 236 bits (119), Expect = 3e-63
Identities = 119/119 (100%)
Strand = Plus / Plus
Query: 1 gagatgaagatggaattgatgggatgttgggcatgcccaacacgatctgtcaacattcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gagatgaagatggaattgatgggatgttgggcatgcccaacacgatctgtcaacattcta 60
Query: 61 tgttatattgacgggtcgtgatgggcactctcaatgtccacttcatgataatataactc 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgttatattgacgggtcgtgatgggcactctcaatgtccacttcatgataatataactc 119
>51472_ppt-miR1033b:pmrd
Length = 119
Score = 153 bits (77), Expect = 3e-38
Identities = 95/101 (94%)
Strand = Plus / Plus
Query: 7 aagatggaattgatgggatgttgggcatgcccaacacgatctgtcaacattctatgttat 66
|||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 7 aagatggagatgatgggatgttgggcatgctcaacacgatctgtcaacattctagagtat 66
Query: 67 attgacgggtcgtgatgggcactctcaatgtccacttcatg 107
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 attgacgggtcgtgatgggcactctcaatgtccacttcatg 107
>51475_ppt-miR1033e:pmrd
Length = 119
Score = 73.8 bits (37), Expect = 3e-14
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 25 tgttgggcatgcccaacacgatctgtcaacattctatgttatattgacgggtcgtgatgg 84
||||||| ||| ||| ||| | |||||||||||| | ||||| |||||||||||||||||
Sbjct: 25 tgttgggaatgtccagcacaacctgtcaacattccaggttatgttgacgggtcgtgatgg 84
Query: 85 gcactctca 93
|||||||||
Sbjct: 85 gcactctca 93
>51474_ppt-miR1033d:pmrd
Length = 119
Score = 73.8 bits (37), Expect = 3e-14
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 42 acgatctgtcaacattctatgttatattgacgggtcgtgatgggcactctcaatgtc 98
|||||||||||||||| | ||||| |||||||||||||||||||||||||| ||||
Sbjct: 42 acgatctgtcaacatttcaggttatgttgacgggtcgtgatgggcactctcactgtc 98
>51471_ppt-miR1033a:pmrd
Length = 119
Score = 61.9 bits (31), Expect = 1e-10
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 51 caacattctatgttatattgacgggtcgtgatgggcactctca 93
|||||||| | ||||| ||||||||||||||||||||||||||
Sbjct: 51 caacattccaggttatgttgacgggtcgtgatgggcactctca 93
