miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51474_ppt-miR1033d:pmrd
Length = 119
Score = 236 bits (119), Expect = 3e-63
Identities = 119/119 (100%)
Strand = Plus / Plus
Query: 1 aagtatttacaaggctggcagtcgcattgggaatgtccatgacgatctgtcaacatttca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagtatttacaaggctggcagtcgcattgggaatgtccatgacgatctgtcaacatttca 60
Query: 61 ggttatgttgacgggtcgtgatgggcactctcactgtctcatgctgatgatgattcgtg 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggttatgttgacgggtcgtgatgggcactctcactgtctcatgctgatgatgattcgtg 119
>51471_ppt-miR1033a:pmrd
Length = 119
Score = 103 bits (52), Expect = 3e-23
Identities = 73/80 (91%)
Strand = Plus / Plus
Query: 24 gcattgggaatgtccatgacgatctgtcaacatttcaggttatgttgacgggtcgtgatg 83
||||||||||||||||| || | ||| ||||||| |||||||||||||||||||||||||
Sbjct: 24 gcattgggaatgtccatcacaacctgccaacattccaggttatgttgacgggtcgtgatg 83
Query: 84 ggcactctcactgtctcatg 103
|||||||||| ||||||||
Sbjct: 84 ggcactctcagcgtctcatg 103
>51475_ppt-miR1033e:pmrd
Length = 119
Score = 93.7 bits (47), Expect = 3e-20
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 27 ttgggaatgtccatgacgatctgtcaacatttcaggttatgttgacgggtcgtgatgggc 86
||||||||||||| || | ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 27 ttgggaatgtccagcacaacctgtcaacattccaggttatgttgacgggtcgtgatgggc 86
Query: 87 actctca 93
|||||||
Sbjct: 87 actctca 93
>51473_ppt-miR1033c:pmrd
Length = 119
Score = 73.8 bits (37), Expect = 3e-14
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 42 acgatctgtcaacatttcaggttatgttgacgggtcgtgatgggcactctcactgtc 98
|||||||||||||||| | ||||| |||||||||||||||||||||||||| ||||
Sbjct: 42 acgatctgtcaacattctatgttatattgacgggtcgtgatgggcactctcaatgtc 98
>51472_ppt-miR1033b:pmrd
Length = 119
Score = 65.9 bits (33), Expect = 6e-12
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 42 acgatctgtcaacatttcaggttatgttgacgggtcgtgatgggcactctcactgtc 98
|||||||||||||||| || ||| |||||||||||||||||||||||||| ||||
Sbjct: 42 acgatctgtcaacattctagagtatattgacgggtcgtgatgggcactctcaatgtc 98
