miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;EU548982.1/151-266 3702:Arabidopsis thaliana
(thale cress)
Length = 116
Score = 222 bits (112), Expect = 1e-57
Identities = 115/116 (99%)
Strand = Plus / Plus
Query: 42 acaagggaacaagtgaagctgccagcatgatctatctttggttaagagatgaatgtgtaa 101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1 acaagggaacaagtgaagctgccagcatgatctatctttggttaagagatgaatgtggaa 60
Query: 102 acatattgcttaaacccaagctaggtcatgctctgacagcctcactccttcctggt 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acatattgcttaaacccaagctaggtcatgctctgacagcctcactccttcctggt 116
>RF00640;MIR167_1;AARH01033933.1/298-187 3694:Populus trichocarpa
Length = 112
Score = 73.8 bits (37), Expect = 8e-13
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 114 aacccaagctaggtcatgctctgacagcctcactccttcct 154
||||| |||||||||||||||||||||||||||||||||||
Sbjct: 69 aaccctagctaggtcatgctctgacagcctcactccttcct 109
Score = 71.9 bits (36), Expect = 3e-12
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 42 acaagggaacaagtgaagctgccagcatgatctatctttggtta 85
||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 1 acaagggaaaaggtgaagctgccagcatgatctatctttggtta 44
>RF00640;MIR167_1;AARH01001059.1/160212-160110 3694:Populus
trichocarpa
Length = 103
Score = 73.8 bits (37), Expect = 8e-13
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 45 agggaacaagtgaagctgccagcatgatctatctttggtta 85
|||||| ||||||||||||||||||||||||||||||||||
Sbjct: 4 agggaaaaagtgaagctgccagcatgatctatctttggtta 44
Score = 65.9 bits (33), Expect = 2e-10
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 114 aacccaagctaggtcatgctctgacagcctcactccttcct 154
||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 60 aaccctagctaggtcatgctgtgacagcctcactccttcct 100
>RF00640;MIR167_1;AASG02000565.1/57130-57272 3988:Ricinus communis
(castor bean)
Length = 143
Score = 73.8 bits (37), Expect = 8e-13
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 114 aacccaagctaggtcatgctctgacagcctcactccttcct 154
||||| |||||||||||||||||||||||||||||||||||
Sbjct: 100 aaccctagctaggtcatgctctgacagcctcactccttcct 140
Score = 63.9 bits (32), Expect = 8e-10
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 42 acaagggaacaagtgaagctgccagcatgatctatctttggtta 85
||||||||| | |||||||||||||||||||||| |||||||||
Sbjct: 1 acaagggaaaaggtgaagctgccagcatgatctagctttggtta 44
>RF00640;MIR167_1;AP006429.1/12775-12654 34305:Lotus japonicus
Length = 122
Score = 71.9 bits (36), Expect = 3e-12
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 42 acaagggaacaagtgaagctgccagcatgatctatctttggtta 85
||||||||| |||||||||||||||||||||||| |||||||||
Sbjct: 1 acaagggaaaaagtgaagctgccagcatgatctagctttggtta 44
Score = 50.1 bits (25), Expect = 1e-05
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 122 ctaggtcatgctctgacagcctcactccttcct 154
|||||||||||| |||||||||||||||||||
Sbjct: 87 ctaggtcatgctgcgacagcctcactccttcct 119
>RF00640;MIR167_1;ABIM01012099.1/4885-4992 3649:Carica papaya
(papaya)
Length = 108
Score = 67.9 bits (34), Expect = 5e-11
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 114 aacccaagctaggtcatgctctgacagcctcactccttcctg 155
||||| || |||||||||||||||||||||||||||||||||
Sbjct: 65 aaccctagttaggtcatgctctgacagcctcactccttcctg 106
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 47 ggaacaagtgaagctgccagcatgatcta 75
|||| ||||||||||||||||||||||||
Sbjct: 6 ggaaaaagtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;CAAP02000379.1/19428-19545 29760:Vitis vinifera
Length = 118
Score = 65.9 bits (33), Expect = 2e-10
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 114 aacccaagctaggtcatgctctgacagcctcactccttcct 154
||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 75 aaccctagctaggtcatgccctgacagcctcactccttcct 115
Score = 63.9 bits (32), Expect = 8e-10
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 43 caagggaacaagtgaagctgccagcatgatctatctttgg 82
|||||||| |||||||||||||||||||||||| ||||||
Sbjct: 2 caagggaataagtgaagctgccagcatgatctagctttgg 41
>RF00640;MIR167_1;EU084500.1/298-436 260130:Acca sellowiana
Length = 139
Score = 58.0 bits (29), Expect = 5e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 43 caagggaacaagtgaagctgccagcatgatcta 75
||||||||| |||||||||||||||||||||||
Sbjct: 2 caagggaacgagtgaagctgccagcatgatcta 34
Score = 48.1 bits (24), Expect = 5e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 114 aacccaagctaggtcatgctctgacagcctcactccttcc 153
||||| |||||||||||||| |||||||||||| |||||
Sbjct: 96 aaccctagctaggtcatgctgcgacagcctcacttcttcc 135
>RF00640;MIR167_1;AC225328.1/5014-5119 4081:Solanum lycopersicum
Length = 106
Score = 58.0 bits (29), Expect = 5e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 47 ggaacaagtgaagctgccagcatgatcta 75
|||||||||||||||||||||||||||||
Sbjct: 6 ggaacaagtgaagctgccagcatgatcta 34
Score = 56.0 bits (28), Expect = 2e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 123 taggtcatgctctgacagcctcactccttcct 154
|||||||||||| |||||||||||||||||||
Sbjct: 72 taggtcatgctcggacagcctcactccttcct 103
>RF00640;MIR167_1;EU947925.1/384-504 4577:Zea mays
Length = 121
Score = 58.0 bits (29), Expect = 5e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 43 caagggaacaagtgaagctgccagcatgatcta 75
||||||||| |||||||||||||||||||||||
Sbjct: 2 caagggaacgagtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;ABXC01000050.1/9782-9902 4558:Sorghum bicolor
(sorghum)
Length = 121
Score = 58.0 bits (29), Expect = 5e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 43 caagggaacaagtgaagctgccagcatgatcta 75
||||||||| |||||||||||||||||||||||
Sbjct: 2 caagggaacgagtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;AC092076.7/52843-52692 39947:Oryza sativa
Japonica Group
Length = 152
Score = 58.0 bits (29), Expect = 5e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 43 caagggaacaagtgaagctgccagcatgatcta 75
||||||||| |||||||||||||||||||||||
Sbjct: 2 caagggaacgagtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;AC174291.12/5719-6052 3880:Medicago truncatula
(barrel medic)
Length = 334
Score = 56.0 bits (28), Expect = 2e-07
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 42 acaagggaacaagtgaagctgccagcatgatctatctttggtta 85
|||| |||| |||||||||||||||||||||||| ||||||||
Sbjct: 1 acaaaggaaaaagtgaagctgccagcatgatctaggtttggtta 44
>RF00640;MIR167_1;ABXC01005647.1/66563-66713 4558:Sorghum bicolor
(sorghum)
Length = 151
Score = 56.0 bits (28), Expect = 2e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 53 agtgaagctgccagcatgatctatctttggtt 84
||||||||||||||||||||||| ||||||||
Sbjct: 12 agtgaagctgccagcatgatctagctttggtt 43
>RF00640;MIR167_1;ABXC01000087.1/205849-206071 4558:Sorghum
bicolor (sorghum)
Length = 223
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 agtgaagctgccagcatgatcta 75
|||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;AL928781.4/79791-79930 4530:Oryza sativa (rice)
Length = 140
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 agtgaagctgccagcatgatcta 75
|||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;AAAA02011018.1/78132-77981 39946:Oryza sativa
Indica Group
Length = 152
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 54 gtgaagctgccagcatgatcta 75
||||||||||||||||||||||
Sbjct: 13 gtgaagctgccagcatgatcta 34
