miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AACV01005168.1/9233-9388 39947:Oryza sativa
Japonica Group
Length = 156
Score = 73.8 bits (37), Expect = 7e-13
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 72 aatgaatctagacatgagcctgtccagattcattgtattaggaaatgtcacat 124
||||||||| |||| |||| ||||||||||||||||||||||| |||||||||
Sbjct: 62 aatgaatctggacaggagcttgtccagattcattgtattaggatatgtcacat 114
Score = 48.1 bits (24), Expect = 4e-05
Identities = 54/64 (84%)
Strand = Plus / Minus
Query: 51 ggatgtaacattttctactacaatgaatctagacatgagcctgtccagattcattgtatt 110
|||||| |||| | ||| |||||||||||| |||| | |||||||||||||||| || |
Sbjct: 116 ggatgtgacatatcctaatacaatgaatctggacaagctcctgtccagattcattatact 57
Query: 111 agga 114
||||
Sbjct: 56 agga 53
>RF00906;MIR1122;AP004178.3/74526-74681 39947:Oryza sativa Japonica
Group
Length = 156
Score = 73.8 bits (37), Expect = 7e-13
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 72 aatgaatctagacatgagcctgtccagattcattgtattaggaaatgtcacat 124
||||||||| |||| |||| ||||||||||||||||||||||| |||||||||
Sbjct: 62 aatgaatctggacaggagcttgtccagattcattgtattaggatatgtcacat 114
Score = 52.0 bits (26), Expect = 3e-06
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 51 ggatgtaacattttctactacaatgaatctagacatgagcctgtccagattcattgtatt 110
|||||| |||| | ||| |||||||||||| |||| | |||||||||||||||| || |
Sbjct: 116 ggatgtgacatatcctaatacaatgaatctggacaagctcctgtccagattcattatact 57
Query: 111 aggaaatgtcacat 124
|||| ||| |||||
Sbjct: 56 aggatatgccacat 43
>RF00906;MIR1122;AP008208.1/29387042-29386887 39947:Oryza sativa
Japonica Group
Length = 156
Score = 61.9 bits (31), Expect = 3e-09
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 51 ggatgtaacattttctactacaatgaatctagacatgagcctgtccagattcatt 105
|||||| ||||||| || |||||||||||||||||| ||||||||||||||||
Sbjct: 41 ggatgtgacattttatagtacaatgaatctagacatcctcctgtccagattcatt 95
>RF00906;MIR1122;AACV01005493.1/30553-30709 39947:Oryza sativa
Japonica Group
Length = 157
Score = 58.0 bits (29), Expect = 4e-08
Identities = 51/57 (89%), Gaps = 1/57 (1%)
Strand = Plus / Minus
Query: 69 tacaatgaatctagacatgag-cctgtccagattcattgtattaggaaatgtcacat 124
||||||||||||||||||| | |||| |||||||| ||||| || ||||||||||||
Sbjct: 99 tacaatgaatctagacatgcggcctgcccagattcgttgtactatgaaatgtcacat 43
>RF00906;MIR1122;AAAA02007473.1/30171-30327 39946:Oryza sativa
Indica Group
Length = 157
Score = 58.0 bits (29), Expect = 4e-08
Identities = 51/57 (89%), Gaps = 1/57 (1%)
Strand = Plus / Minus
Query: 69 tacaatgaatctagacatga-gcctgtccagattcattgtattaggaaatgtcacat 124
|||||||||||||||||||| |||||| ||||||| || || || ||||||||||||
Sbjct: 99 tacaatgaatctagacatgaggcctgttcagattcgttatactatgaaatgtcacat 43
>RF00906;MIR1122;AACV01013954.1/10702-10856 39947:Oryza sativa
Japonica Group
Length = 155
Score = 54.0 bits (27), Expect = 7e-07
Identities = 64/74 (86%), Gaps = 3/74 (4%)
Strand = Plus / Plus
Query: 49 acggatgtaacattttctactacaatgaatctagacatga--gcctgtccagattcattg 106
||||||| |||||||||| ||| ||||||||||||| || |||||||||||||| | |
Sbjct: 37 acggatgggacattttctaatactatgaatctagaca-gactgcctgtccagattcgtag 95
Query: 107 tattaggaaatgtc 120
|| |||||||||||
Sbjct: 96 tagtaggaaatgtc 109
>RF00906;MIR1122;AAAA02032515.1/3115-3271 39946:Oryza sativa Indica
Group
Length = 157
Score = 52.0 bits (26), Expect = 3e-06
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 90 cctgtccagattcattgtattaggaaatgtcacattca 127
|||||||||||||||||||||| || |||||||||||
Sbjct: 77 cctgtccagattcattgtattataaagtgtcacattca 40
>RF00906;MIR1122;AP004636.3/36389-36234 39947:Oryza sativa Japonica
Group
Length = 156
Score = 52.0 bits (26), Expect = 3e-06
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 51 ggatgtaacattttctactacaatgaatctagacatgagcctgtccagattcattgtatt 110
|||||| |||||||||| ||||| |||||| |||| | ||||||||||| ||||| |
Sbjct: 41 ggatgtgacattttctagtacaacgaatctggacaaaggactgtccagatttattgtgct 100
Query: 111 aggaaatgtcacat 124
|||| |||||||||
Sbjct: 101 aggagatgtcacat 114
>RF00906;MIR1122;AAAA02029602.1/21868-22024 39946:Oryza sativa
Indica Group
Length = 157
Score = 50.1 bits (25), Expect = 1e-05
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 92 tgtccagattcattgtattaggaaatgtcacat 124
||||||||||||||||| ||||| |||||||||
Sbjct: 83 tgtccagattcattgtactaggatatgtcacat 115
>RF00906;MIR1122;AP008217.1/24769050-24768917 39947:Oryza sativa
Japonica Group
Length = 134
Score = 50.1 bits (25), Expect = 1e-05
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 88 agcctgtccagattcattgtattaggaaatgtc 120
||||||||||||||| ||||||||| |||||||
Sbjct: 79 agcctgtccagattcgttgtattagaaaatgtc 47
>RF00906;MIR1122;AP008212.1/5825633-5825757 39947:Oryza sativa
Japonica Group
Length = 125
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 93 gtccagattcattgtattaggaaatgtcacat 124
|||||||||||||||||||||| ||||||||
Sbjct: 74 gtccagattcattgtattaggatgtgtcacat 43
>RF00906;MIR1122;AACV01025590.1/274-429 39947:Oryza sativa Japonica
Group
Length = 156
Score = 48.1 bits (24), Expect = 4e-05
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 61 ttttctactacaatgaatctagacatgagcctgtccagattcattgtattaggaaatgtc 120
||||||| ||||| |||||| |||| |||| |||||||||| ||| | |||||||||||
Sbjct: 51 ttttctagtacaacgaatctggacaggagcatgtccagatttgttggactaggaaatgtc 110
>RF00906;MIR1122;AACV01012603.1/10671-10517 39947:Oryza sativa
Japonica Group
Length = 155
Score = 48.1 bits (24), Expect = 4e-05
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 69 tacaatgaatctagacatgagcctgtccagattcattgta 108
||||| |||||| ||||||||| ||||||||||| |||||
Sbjct: 99 tacaacgaatctggacatgagcatgtccagattcgttgta 60
>RF00906;MIR1122;AP008216.1/2906565-2906717 39947:Oryza sativa
Japonica Group
Length = 153
Score = 48.1 bits (24), Expect = 4e-05
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 87 gagcctgtccagattcattgtattaggaaatgtcacattc 126
|||||||||||||||||| ||| |||| |||||| |||||
Sbjct: 80 gagcctgtccagattcatagtactaggtaatgtcccattc 41
>RF00906;MIR1122;AP008211.1/22476267-22476112 39947:Oryza sativa
Japonica Group
Length = 156
Score = 48.1 bits (24), Expect = 4e-05
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 50 cggatgtaacattttctactacaatgaatctagacatgagcctgtccagattcattgtat 109
||||||| |||||| || ||||||||||||||||| |||||||| |||| ||||||
Sbjct: 40 cggatgtgacatttcatagtacaatgaatctagacaccctcctgtccacattcgttgtat 99
Query: 110 taggaaat 117
|| |||||
Sbjct: 100 tatgaaat 107
>RF00906;MIR1122;AP008212.1/7989879-7989724 39947:Oryza sativa
Japonica Group
Length = 156
Score = 48.1 bits (24), Expect = 4e-05
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 69 tacaatgaatctagacatgagcctgtccagattcattgtattaggaaatgtc 120
|||||||||||| |||||| |||||||||||| ||||| || ||||||||
Sbjct: 59 tacaatgaatctggacatgcatctgtccagattcgttgtactatgaaatgtc 110
>RF00906;MIR1122;AACV01003934.1/29289-29133 39947:Oryza sativa
Japonica Group
Length = 157
Score = 48.1 bits (24), Expect = 4e-05
Identities = 37/40 (92%), Gaps = 1/40 (2%)
Strand = Plus / Minus
Query: 63 ttctactacaatgaatctagacat-gagcctgtccagatt 101
||||| |||||||||||||||||| ||||||||||||||
Sbjct: 105 ttctagtacaatgaatctagacataaagcctgtccagatt 66
>RF00906;MIR1122;AAAA02030950.1/26939-26775 39946:Oryza sativa
Indica Group
Length = 165
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 94 tccagattcattgtattaggaaatgtcacat 124
||||||||||||||||||||| ||||||||
Sbjct: 81 tccagattcattgtattaggatgtgtcacat 51
>RF00906;MIR1122;AC232160.1/3827-3951 63629:Oryza minuta
Length = 125
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 90 cctgtccagattcattgtattaggaaatgtc 120
||||||||||||||||||| ||||| |||||
Sbjct: 77 cctgtccagattcattgtactaggatatgtc 47
>RF00906;MIR1122;AC217582.2/26328-26173 4537:Oryza punctata
Length = 156
Score = 46.1 bits (23), Expect = 2e-04
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 61 ttttctactacaatgaatctagacatgagcctgtccagattcattgtattaggaa 115
||||||| |||||||||||| |||||| |||| ||||| ||||||| ||||||
Sbjct: 51 ttttctagtacaatgaatctggacatgcttctgtgcagatacattgtactaggaa 105
>RF00906;MIR1122;AAAA02032049.1/7937-7781 39946:Oryza sativa Indica
Group
Length = 157
Score = 46.1 bits (23), Expect = 2e-04
Identities = 54/63 (85%), Gaps = 1/63 (1%)
Strand = Plus / Minus
Query: 63 ttctactacaatgaatctagacatga-gcctgtccagattcattgtattaggaaatgtca 121
||||| ||||| |||||| ||||| | |||||||||||||| ||||| ||||| | ||||
Sbjct: 105 ttctagtacaacgaatctggacataaagcctgtccagattcgttgtactaggataagtca 46
Query: 122 cat 124
|||
Sbjct: 45 cat 43
>RF00906;MIR1122;AACV01012241.1/1523-1654 39947:Oryza sativa
Japonica Group
Length = 132
Score = 46.1 bits (23), Expect = 2e-04
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 86 tgagcctgtccagattcattgtattaggaaatgtcacat 124
||||||||||||||||||| || |||||| ||||||||
Sbjct: 81 tgagcctgtccagattcatagtcctaggaagtgtcacat 43
>RF00906;MIR1122;AC123518.2/65954-65790 39947:Oryza sativa Japonica
Group
Length = 165
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 94 tccagattcattgtattaggaaatgtcacat 124
||||||||||||||||||||| ||||||||
Sbjct: 85 tccagattcattgtattaggatgtgtcacat 115
>RF00906;MIR1122;AC027658.1/92773-92617 39947:Oryza sativa Japonica
Group
Length = 157
Score = 46.1 bits (23), Expect = 2e-04
Identities = 63/75 (84%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 51 ggatgtaacattttctactacaatgaatctagacatgagc-ctgtccagattcattgtat 109
|||||| |||| | ||| || ||||||||||||||| | ||||||| ||| |||||||
Sbjct: 41 ggatgtgacatatcctagtataatgaatctagacatacggtctgtccaaatttattgtat 100
Query: 110 taggaaatgtcacat 124
||||| |||||||||
Sbjct: 101 taggatatgtcacat 115
>RF00906;MIR1122;AP006458.4/60963-61093 39947:Oryza sativa Japonica
Group
Length = 131
Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 90 cctgtccagattcattgtattaggaaatgtcacat 124
||||||||||||| | ||||||||| |||||||||
Sbjct: 77 cctgtccagattcgtcgtattaggatatgtcacat 43
>RF00906;MIR1122;AAAA02018504.1/8341-8217 39946:Oryza sativa Indica
Group
Length = 125
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 93 gtccagattcattgtattagga 114
||||||||||||||||||||||
Sbjct: 52 gtccagattcattgtattagga 73
>RF00906;MIR1122;AAAA02005262.1/2781-2672 39946:Oryza sativa Indica
Group
Length = 110
Score = 44.1 bits (22), Expect = 6e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 91 ctgtccagattcattgtattaggaaatgtcacattcac 128
|||||||||||||||||| ||||| ||||| ||||||
Sbjct: 35 ctgtccagattcattgtactaggatgtgtcatattcac 72
>RF00906;MIR1122;AAAA02007259.1/4313-4455 39946:Oryza sativa Indica
Group
Length = 143
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 95 ccagattcattgtattaggaaatgtcacat 124
|||||||||||||| ||||| |||||||||
Sbjct: 68 ccagattcattgtactaggatatgtcacat 97
>RF00906;MIR1122;AP004047.3/87830-87972 39947:Oryza sativa Japonica
Group
Length = 143
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 95 ccagattcattgtattaggaaatgtcacat 124
|||||||||||||| ||||| |||||||||
Sbjct: 68 ccagattcattgtactaggatatgtcacat 97
>RF00906;MIR1122;AP008208.1/15568785-15568653 39947:Oryza sativa
Japonica Group
Length = 133
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 91 ctgtccagattcattgtattaggaaatgtc 120
|||||||||||| ||||| |||||||||||
Sbjct: 58 ctgtccagattcgttgtactaggaaatgtc 87
>RF00906;MIR1122;AP004314.3/140580-140716 39947:Oryza sativa
Japonica Group
Length = 137
Score = 44.1 bits (22), Expect = 6e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 91 ctgtccagattcattgtattaggaaatgtcacat 124
||||||||||| |||||||||||| ||||||||
Sbjct: 76 ctgtccagatttattgtattaggatgtgtcacat 43
