miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00645;MIR169_2;AB012243.1/43077-42837 3702:Arabidopsis thaliana
(thale cress)
Length = 241
Score = 105 bits (53), Expect = 4e-22
Identities = 99/111 (89%), Gaps = 5/111 (4%)
Strand = Plus / Plus
Query: 158 cgtacgtaatctaatacgaaaaagtatttacttatt--tatatgtgtgttggtg--agat 213
|||||||||| ||||||||||||||||||||||||| |||||||||||||| | |||
Sbjct: 132 cgtacgtaatataatacgaaaaagtatttacttatttatatatgtgtgttggggcaagaa 191
Query: 214 gtgtaaacaaagcaagcccggcaagtcatctctggctatgcaactgcctct 264
|||| ||| |||| ||||||||||||||||| |||||||||||||| ||||
Sbjct: 192 gtgt-aaccaagctagcccggcaagtcatctatggctatgcaactgtctct 241
Score = 81.8 bits (41), Expect = 5e-15
Identities = 41/41 (100%)
Strand = Plus / Plus
Query: 31 aggccattgttgttcagccaaggatgacttgccggtagctt 71
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aggccattgttgttcagccaaggatgacttgccggtagctt 41
>RF00645;MIR169_2;AASG02007020.1/8399-8148 3988:Ricinus communis
(castor bean)
Length = 252
Score = 48.1 bits (24), Expect = 7e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 232 cggcaagtcatctctggctatgcaactgcctc 263
|||||||||||||||||||| ||||||||||
Sbjct: 220 cggcaagtcatctctggctactcaactgcctc 251
>RF00645;MIR169_2;AARH01011492.1/38551-38428 3694:Populus
trichocarpa
Length = 124
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 43 ttcagccaaggatgacttgccgg 65
|||||||||||||||||||||||
Sbjct: 10 ttcagccaaggatgacttgccgg 32
>RF00645;MIR169_2;AARH01010231.1/110431-110554 3694:Populus
trichocarpa
Length = 124
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 43 ttcagccaaggatgacttgccgg 65
|||||||||||||||||||||||
Sbjct: 10 ttcagccaaggatgacttgccgg 32
>RF00645;MIR169_2;AASG02000866.1/18426-18322 3988:Ricinus communis
(castor bean)
Length = 105
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 43 ttcagccaaggatgacttgccgg 65
|||||||||||||||||||||||
Sbjct: 10 ttcagccaaggatgacttgccgg 32
>RF00645;MIR169_2;AC135313.13/45543-45452 3880:Medicago truncatula
(barrel medic)
Length = 92
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 45 cagccaaggatgacttgccggta 67
|||||||||||||||||||||||
Sbjct: 12 cagccaaggatgacttgccggta 34
>RF00645;MIR169_2;AP005769.3/167010-166879 39947:Oryza sativa
Japonica Group
Length = 132
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 45 cagccaaggatgacttgccggta 67
|||||||||||||||||||||||
Sbjct: 12 cagccaaggatgacttgccggta 34
