miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>47031_ath-miR408:pmrd
Length = 218
Score = 212 bits (107), Expect = 8e-56
Identities = 136/145 (93%), Gaps = 8/145 (5%)
Strand = Plus / Plus
Query: 2 aaggttagattggtattgcaatgaaagaagt------ggtaatgatagagagagacaggg 55
|||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 1 aaggttagattggtattgcaatgaaagaagacaaagcggtaatga--gagagagacaggg 58
Query: 56 aacaagcagagcatggattgagtttactaaaacattaaacgactctgttttgtctctacc 115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59 aacaagcagagcatggattgagtttactaaaacattaaacgactctgttttgtctctacc 118
Query: 116 catgcactgcctcttccctggctcc 140
|||||||||||||||||||||||||
Sbjct: 119 catgcactgcctcttccctggctcc 143
>48142_ath-miRf11042-akr:pmrd
Length = 99
Score = 192 bits (97), Expect = 7e-50
Identities = 97/97 (100%)
Strand = Plus / Minus
Query: 44 agagagacagggaacaagcagagcatggattgagtttactaaaacattaaacgactctgt 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 agagagacagggaacaagcagagcatggattgagtttactaaaacattaaacgactctgt 40
Query: 104 tttgtctctacccatgcactgcctcttccctggctcc 140
|||||||||||||||||||||||||||||||||||||
Sbjct: 39 tttgtctctacccatgcactgcctcttccctggctcc 3
>51762_ptc-miR408:pmrd
Length = 105
Score = 67.9 bits (34), Expect = 3e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 101 tgttttgtctctacccatgcactgcctcttccctggct 138
||||||| ||||||||||||||||||||||||||||||
Sbjct: 60 tgttttggctctacccatgcactgcctcttccctggct 97
>54892_vvi-miR408:pmrd
Length = 107
Score = 63.9 bits (32), Expect = 5e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 100 ctgttttgtctctacccatgcactgcctcttccctggctc 139
||||||| |||||||||||||||||||||||||||||||
Sbjct: 60 ctgtttttgctctacccatgcactgcctcttccctggctc 99
>54389_rco-miR408:pmrd
Length = 129
Score = 63.9 bits (32), Expect = 5e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 99 tctgttttgtctctacccatgcactgcctcttccctggct 138
||||||||| |||||||| |||||||||||||||||||||
Sbjct: 72 tctgttttggctctacccctgcactgcctcttccctggct 111
>53677_ptc-miRf11855-akr:pmrd
Length = 79
Score = 61.9 bits (31), Expect = 2e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 101 tgttttgtctctacccatgcactgcctcttccctg 135
||||||| |||||||||||||||||||||||||||
Sbjct: 45 tgttttggctctacccatgcactgcctcttccctg 79
>48428_cpt-miR408:pmrd
Length = 100
Score = 60.0 bits (30), Expect = 7e-10
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 98 ctctgttttgtctctacccatgcactgcctcttccctggctc 139
|||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 51 ctctgttttggctcctcccatgcactgcctcttccctggctc 92
>51347_ppe-miR408:pmrd
Length = 105
Score = 54.0 bits (27), Expect = 4e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 100 ctgttttgtctctacccatgcactgcctcttccctggct 138
||||| || |||||| |||||||||||||||||||||||
Sbjct: 58 ctgttgtggctctactcatgcactgcctcttccctggct 96
Score = 40.1 bits (20), Expect = 7e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 48 agacagggaacaagcagagcatggattgagtt 79
|||||||||||| | ||||||||||| |||||
Sbjct: 8 agacagggaacaggtagagcatggatggagtt 39
>54649_sof-miR408d:pmrd
Length = 215
Score = 48.1 bits (24), Expect = 3e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 113 acccatgcactgcctcttccctggctcc 140
|||| |||||||||||||||||||||||
Sbjct: 172 acccctgcactgcctcttccctggctcc 199
>46892_aqc-miR408:pmrd
Length = 87
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 115 ccatgcactgcctcttccctggct 138
||||||||||||||||||||||||
Sbjct: 24 ccatgcactgcctcttccctggct 1
>55104_zma-miR408:pmrd
Length = 191
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 118 tgcactgcctcttccctggctcc 140
|||||||||||||||||||||||
Sbjct: 153 tgcactgcctcttccctggctcc 175
>54690_tae-miR408:pmrd
Length = 187
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 118 tgcactgcctcttccctggctcc 140
|||||||||||||||||||||||
Sbjct: 137 tgcactgcctcttccctggctcc 159
>54648_sof-miR408c:pmrd
Length = 286
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 118 tgcactgcctcttccctggctcc 140
|||||||||||||||||||||||
Sbjct: 248 tgcactgcctcttccctggctcc 270
>54647_sof-miR408b:pmrd
Length = 286
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 118 tgcactgcctcttccctggctcc 140
|||||||||||||||||||||||
Sbjct: 248 tgcactgcctcttccctggctcc 270
>54646_sof-miR408a:pmrd
Length = 283
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 118 tgcactgcctcttccctggctcc 140
|||||||||||||||||||||||
Sbjct: 245 tgcactgcctcttccctggctcc 267
>51566_pta-miR408:pmrd
Length = 86
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 117 atgcactgcctcttccctggctc 139
|||||||||||||||||||||||
Sbjct: 64 atgcactgcctcttccctggctc 86
>51397_ppt-miR408b:pmrd
Length = 144
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 116 catgcactgcctcttccctggct 138
|||||||||||||||||||||||
Sbjct: 92 catgcactgcctcttccctggct 114
>48975_osa-miR408:pmrd
Length = 213
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 118 tgcactgcctcttccctggctcc 140
|||||||||||||||||||||||
Sbjct: 154 tgcactgcctcttccctggctcc 176
>54585_smo-miR408:pmrd
Length = 109
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 117 atgcactgcctcttccctggct 138
||||||||||||||||||||||
Sbjct: 76 atgcactgcctcttccctggct 97
>48317_bdi-miR408:pmrd
Length = 133
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 115 ccatgcactgcctcttccctgg 136
||||||||||||||||||||||
Sbjct: 67 ccatgcactgcctcttccctgg 88
>54499_sbi-miR408:pmrd
Length = 205
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 118 tgcactgcctcttccctggct 138
|||||||||||||||||||||
Sbjct: 185 tgcactgcctcttccctggct 205
