miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>46932_ath-miR159b:pmrd
Length = 196
Score = 341 bits (172), Expect = 1e-94
Identities = 188/196 (95%)
Strand = Plus / Plus
Query: 1 ggaagagctccttgaagttcaatggagggtttagcagggtgaagtaaagctgctaagcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggaagagctccttgaagttcaatggagggtttagcagggtgaagtaaagctgctaagcta 60
Query: 61 tggatcccataagccttatcaaattcaatataattgatgataaggnnnnnnnnatggatg 120
||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 61 tggatcccataagccttatcaaattcaatataattgatgataaggttttttttatggatg 120
Query: 121 ccatatctcaggagctttcacttacccctttaatggcttcactcttctttggattgaagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ccatatctcaggagctttcacttacccctttaatggcttcactcttctttggattgaagg 180
Query: 181 gagctcttcatctctc 196
||||||||||||||||
Sbjct: 181 gagctcttcatctctc 196
>46931_ath-miR159a:pmrd
Length = 184
Score = 77.8 bits (39), Expect = 3e-15
Identities = 62/67 (92%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 122 catatctcaggagctttcacttacccctttaatggcttc-actcttctttggattgaagg 180
||||||||||||||||| |||| ||| ||||||||||| ||||||||||||||||||||
Sbjct: 117 catatctcaggagctttaacttgccc-tttaatggcttttactcttctttggattgaagg 175
Query: 181 gagctct 187
|||||||
Sbjct: 176 gagctct 182
Score = 71.9 bits (36), Expect = 2e-13
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 4 agagctccttgaagttcaatggagggtttagcagggtgaagtaaagctgctaagctatgg 63
|||||||||| |||||||| | ||| |||||||| ||| ||||||||||||||||||
Sbjct: 3 agagctccttaaagttcaaacatgagttgagcagggtaaagaaaagctgctaagctatgg 62
Query: 64 atcccataagcc 75
||||||||||||
Sbjct: 63 atcccataagcc 74
>48395_bra-miR159a:pmrd
Length = 185
Score = 73.8 bits (37), Expect = 4e-14
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 7 gctccttgaagttcaatggagggtttagcagggtgaagtaaagctgctaagctatggatc 66
||||||| ||||||| ||| |||||||||||| ||| ||||||||||||||||| |||
Sbjct: 8 gctccttatagttcaaacgagagtttagcagggtaaagaaaagctgctaagctatgaatc 67
Query: 67 ccataagcc 75
|||||||||
Sbjct: 68 ccataagcc 76
Score = 69.9 bits (35), Expect = 7e-13
Identities = 61/67 (91%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 122 catatctcaggagctttcacttacccctttaatggcttc-actcttctttggattgaagg 180
||||||||||||||||| |||| ||| |||||| |||| ||||||||||||||||||||
Sbjct: 117 catatctcaggagctttaacttgccc-tttaattgcttttactcttctttggattgaagg 175
Query: 181 gagctct 187
|||||||
Sbjct: 176 gagctct 182
>48339_bna-miR159:pmrd
Length = 183
Score = 73.8 bits (37), Expect = 4e-14
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 7 gctccttgaagttcaatggagggtttagcagggtgaagtaaagctgctaagctatggatc 66
||||||| ||||||| ||| |||||||||||| ||| ||||||||||||||||| |||
Sbjct: 6 gctccttatagttcaaacgagagtttagcagggtaaagaaaagctgctaagctatgaatc 65
Query: 67 ccataagcc 75
|||||||||
Sbjct: 66 ccataagcc 74
Score = 69.9 bits (35), Expect = 7e-13
Identities = 61/67 (91%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 122 catatctcaggagctttcacttacccctttaatggcttc-actcttctttggattgaagg 180
||||||||||||||||| |||| ||| |||||| |||| ||||||||||||||||||||
Sbjct: 115 catatctcaggagctttaacttgccc-tttaattgcttttactcttctttggattgaagg 173
Query: 181 gagctct 187
|||||||
Sbjct: 174 gagctct 180
>54674_tae-miR159b:pmrd
Length = 255
Score = 48.1 bits (24), Expect = 3e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 166 tctttggattgaagggagctcttcatct 193
|||||||||||||||||||||| |||||
Sbjct: 228 tctttggattgaagggagctctgcatct 255
>54378_pvu-miR159:pmrd
Length = 174
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 164 cttctttggattgaagggagctct 187
||||||||||||||||||||||||
Sbjct: 149 cttctttggattgaagggagctct 172
>54377_pvu-miR159:pmrd
Length = 174
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 164 cttctttggattgaagggagctct 187
||||||||||||||||||||||||
Sbjct: 149 cttctttggattgaagggagctct 172
>48820_osa-miR159b:pmrd
Length = 188
Score = 48.1 bits (24), Expect = 3e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 166 tctttggattgaagggagctcttcatct 193
|||||||||||||||||||||| |||||
Sbjct: 156 tctttggattgaagggagctctgcatct 183
>48819_osa-miR159a:pmrd
Length = 272
Score = 48.1 bits (24), Expect = 3e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 166 tctttggattgaagggagctcttcatct 193
|||||||||||||||||||||| |||||
Sbjct: 240 tctttggattgaagggagctctgcatct 267
>48796_oru-miR159:pmrd
Length = 274
Score = 48.1 bits (24), Expect = 3e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 166 tctttggattgaagggagctcttcatct 193
|||||||||||||||||||||| |||||
Sbjct: 240 tctttggattgaagggagctctgcatct 267
>48539_gma-miR159a:pmrd
Length = 214
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 164 cttctttggattgaagggagctct 187
||||||||||||||||||||||||
Sbjct: 171 cttctttggattgaagggagctct 194
>54930_zma-miR159a:pmrd
Length = 246
Score = 46.1 bits (23), Expect = 1e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 166 tctttggattgaagggagctcttcatc 192
|||||||||||||||||||||| ||||
Sbjct: 205 tctttggattgaagggagctctgcatc 231
>54631_sof-miR159d:pmrd
Length = 265
Score = 46.1 bits (23), Expect = 1e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 166 tctttggattgaagggagctcttcatc 192
|||||||||||||||||||||| ||||
Sbjct: 224 tctttggattgaagggagctctgcatc 250
>54629_sof-miR159b:pmrd
Length = 266
Score = 46.1 bits (23), Expect = 1e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 166 tctttggattgaagggagctcttcatc 192
|||||||||||||||||||||| ||||
Sbjct: 225 tctttggattgaagggagctctgcatc 251
>54628_sof-miR159a:pmrd
Length = 265
Score = 46.1 bits (23), Expect = 1e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 166 tctttggattgaagggagctcttcatc 192
|||||||||||||||||||||| ||||
Sbjct: 224 tctttggattgaagggagctctgcatc 250
>48699_mtr-miR159a:pmrd
Length = 168
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 165 ttctttggattgaagggagctct 187
|||||||||||||||||||||||
Sbjct: 145 ttctttggattgaagggagctct 167
>54931_zma-miR159b:pmrd
Length = 221
Score = 44.1 bits (22), Expect = 4e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 168 tttggattgaagggagctcttcatct 193
|||||||||||||||||||| |||||
Sbjct: 182 tttggattgaagggagctctgcatct 207
>54392_sar-miR159:pmrd
Length = 175
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 166 tctttggattgaagggagctct 187
||||||||||||||||||||||
Sbjct: 153 tctttggattgaagggagctct 174
>51338_pgl-miR159:pmrd
Length = 226
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 166 tctttggattgaagggagctct 187
||||||||||||||||||||||
Sbjct: 204 tctttggattgaagggagctct 225
>48825_osa-miR159m:pmrd
Length = 249
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 166 tctttggattgaagggagctct 187
||||||||||||||||||||||
Sbjct: 227 tctttggattgaagggagctct 248
>48701_mtr-miR159c:pmrd
Length = 44
Score = 44.1 bits (22), Expect = 4e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 168 tttggattgaagggagctcttcatct 193
|||||||||||||||||||| |||||
Sbjct: 1 tttggattgaagggagctctacatct 26
>48656_hvv-miR159a:pmrd
Length = 303
Score = 44.1 bits (22), Expect = 4e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 168 tttggattgaagggagctcttcatct 193
|||||||||||||||||||| |||||
Sbjct: 1 tttggattgaagggagctctgcatct 26
>54937_zma-miR159m:pmrd
Length = 457
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 168 tttggattgaagggagctcttcatc 192
|||||||||||||||||||| ||||
Sbjct: 1 tttggattgaagggagctctgcatc 25
>54777_vvi-miR159c:pmrd
Length = 190
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 168 tttggattgaagggagctcttcatctctc 196
|||||||||||||||||||| || |||||
Sbjct: 160 tttggattgaagggagctctacacctctc 188
>54653_spr-miR159:pmrd
Length = 392
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 168 tttggattgaagggagctcttcatc 192
|||||||||||||||||||| ||||
Sbjct: 1 tttggattgaagggagctctgcatc 25
>52093_ptc-miRf10271-akr:pmrd
Length = 174
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 aagctgctaagctatggatcc 67
|||||||||||||||||||||
Sbjct: 49 aagctgctaagctatggatcc 69
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 168 tttggattgaagggagctct 187
||||||||||||||||||||
Sbjct: 149 tttggattgaagggagctct 168
>51604_ptc-miR159c:pmrd
Length = 183
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 aagctgctaagctatggatcc 67
|||||||||||||||||||||
Sbjct: 54 aagctgctaagctatggatcc 74
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 168 tttggattgaagggagctct 187
||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctct 173
>51602_ptc-miR159a:pmrd
Length = 183
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 aagctgctaagctatggatcc 67
|||||||||||||||||||||
Sbjct: 54 aagctgctaagctatggatcc 74
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 168 tttggattgaagggagctct 187
||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctct 173
>48728_mtr-miR319b:pmrd
Length = 42
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 169 ttggattgaagggagctcttcatct 193
||||||||||||||||||| |||||
Sbjct: 1 ttggattgaagggagctctacatct 25
>54673_tae-miR159a:pmrd
Length = 177
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 168 tttggattgaagggagctct 187
||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctct 173
>54540_sly-miR159:pmrd
Length = 177
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 168 tttggattgaagggagctct 187
||||||||||||||||||||
Sbjct: 157 tttggattgaagggagctct 176
>51603_ptc-miR159b:pmrd
Length = 187
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 168 tttggattgaagggagctct 187
||||||||||||||||||||
Sbjct: 158 tttggattgaagggagctct 177
>48824_osa-miR159f:pmrd
Length = 188
Score = 40.1 bits (20), Expect = 6e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 169 ttggattgaagggagctcttcatctctc 196
||||||||||||||||||| || |||||
Sbjct: 159 ttggattgaagggagctctacacctctc 186
>48821_osa-miR159c:pmrd
Length = 197
Score = 40.1 bits (20), Expect = 6e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 169 ttggattgaagggagctcttcatctctc 196
|||||||||||||||||| ||||||||
Sbjct: 168 ttggattgaagggagctccacatctctc 195
>48686_ltu-miR159:pmrd
Length = 345
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 168 tttggattgaagggagctct 187
||||||||||||||||||||
Sbjct: 1 tttggattgaagggagctct 20
>48657_hvv-miR159b:pmrd
Length = 174
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 168 tttggattgaagggagctct 187
||||||||||||||||||||
Sbjct: 154 tttggattgaagggagctct 173
