miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AC034107.5/26716-26923 3702:Arabidopsis thaliana
(thale cress)
Length = 208
Score = 341 bits (172), Expect = 2e-93
Identities = 188/196 (95%)
Strand = Plus / Plus
Query: 1 ggaagagctccttgaagttcaatggagggtttagcagggtgaagtaaagctgctaagcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 ggaagagctccttgaagttcaatggagggtttagcagggtgaagtaaagctgctaagcta 68
Query: 61 tggatcccataagccttatcaaattcaatataattgatgataaggnnnnnnnnatggatg 120
||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 69 tggatcccataagccttatcaaattcaatataattgatgataaggttttttttatggatg 128
Query: 121 ccatatctcaggagctttcacttacccctttaatggcttcactcttctttggattgaagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 ccatatctcaggagctttcacttacccctttaatggcttcactcttctttggattgaagg 188
Query: 181 gagctcttcatctctc 196
||||||||||||||||
Sbjct: 189 gagctcttcatctctc 204
>RF00638;MIR159;AC172875.2/71149-71331 51351:Brassica rapa subsp.
pekinensis
Length = 183
Score = 85.7 bits (43), Expect = 2e-16
Identities = 74/83 (89%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 114 atggatgccatatctcaggagctttcacttacccctttaatggcttcactcttctttgga 173
|||||| |||||||| |||| |||||||| ||| ||||||| |||||||||||||||||
Sbjct: 98 atggattccatatctttggagttttcacttgcccttttaatgacttcactcttctttgga 157
Query: 174 ttgaagggagctcttcatctctc 196
|||||| |||||||||||||||
Sbjct: 158 -tgaaggaagctcttcatctctc 179
Score = 63.9 bits (32), Expect = 8e-10
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 25 gagggtttagcagggtgaagtaaagctgctaagctatgga 64
|||||||||||| ||||||||||||||||||| |||||||
Sbjct: 33 gagggtttagcaaggtgaagtaaagctgctaatctatgga 72
>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
cress)
Length = 204
Score = 81.8 bits (41), Expect = 3e-15
Identities = 67/73 (91%), Gaps = 2/73 (2%)
Strand = Plus / Plus
Query: 122 catatctcaggagctttcacttacccctttaatggcttc-actcttctttggattgaagg 180
||||||||||||||||| |||| ||| ||||||||||| ||||||||||||||||||||
Sbjct: 126 catatctcaggagctttaacttgccc-tttaatggcttttactcttctttggattgaagg 184
Query: 181 gagctcttcatct 193
||||||| |||||
Sbjct: 185 gagctctacatct 197
Score = 71.9 bits (36), Expect = 3e-12
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 4 agagctccttgaagttcaatggagggtttagcagggtgaagtaaagctgctaagctatgg 63
|||||||||| |||||||| | ||| |||||||| ||| ||||||||||||||||||
Sbjct: 12 agagctccttaaagttcaaacatgagttgagcagggtaaagaaaagctgctaagctatgg 71
Query: 64 atcccataagcc 75
||||||||||||
Sbjct: 72 atcccataagcc 83
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 168 tttggattgaagggagctcttcatctctc 196
|||||||||||||||||||| ||||||||
Sbjct: 162 tttggattgaagggagctctacatctctc 190
>RF00638;MIR159;EU869041.1/17-203 39947:Oryza sativa Japonica Group
Length = 187
Score = 48.1 bits (24), Expect = 5e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 166 tctttggattgaagggagctcttcatct 193
|||||||||||||||||||||| |||||
Sbjct: 153 tctttggattgaagggagctctgcatct 180
>RF00638;MIR159;AP008207.1/17678032-17678305 39947:Oryza sativa
Japonica Group
Length = 274
Score = 48.1 bits (24), Expect = 5e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 166 tctttggattgaagggagctcttcatct 193
|||||||||||||||||||||| |||||
Sbjct: 240 tctttggattgaagggagctctgcatct 267
>RF00638;MIR159;EU955086.1/295-527 4577:Zea mays
Length = 233
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 166 tctttggattgaagggagctcttcatc 192
|||||||||||||||||||||| ||||
Sbjct: 199 tctttggattgaagggagctctgcatc 225
>RF00638;MIR159;ABXC01001787.1/21430-21187 4558:Sorghum bicolor
(sorghum)
Length = 244
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 166 tctttggattgaagggagctcttcatc 192
|||||||||||||||||||||| ||||
Sbjct: 210 tctttggattgaagggagctctgcatc 236
